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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239887 (39 seq.)
>W131053695
ANAH01000035
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
83335
83263
-
Lys
CTT
[ENA]
¡û
>W131086647
AOBT01000021
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
36189
36116
-
Lys
CTT
[ENA]
¡û
>W1711625250
MPIN01000002
Myxococcota
Cystobacter ferrugineus [MPIN]
275772
275844
+
Lys
CTT
[ENA]
¡û
>W1711628638
MPOI01000010
Myxococcota
Archangium sp. Cb G35 [MPOI]
419686
419611
-
Lys
CTT
[ENA]
¡û
>C014481
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
2340154
2340226
+
Lys
CTT
[Ensembl]
¡û
>w012158
AAMD01000114
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
608
531
-
Lys
CTT
[ENA]
¡û
>WENV181192053
OEPS010378721
[OEPS] soil metagenome; soil
310
237
-
Lys
CTT
[ENA]
¢þ
>WENV183695017
ORMF012321873
[ORMF] groundwater metagenome; groundwater
294
366
+
Lys
CTT
[ENA]
¢þ
>WENV170556980
CXWL01017050
[CXWL] groundwater metagenome; biofilm material
598
672
+
Lys
CTT
[ENA]
¢þ
>C181057870
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
9140469
9140397
-
Lys
CTT
-
¡û
>C181059812
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
6417587
6417659
+
Lys
CTT
-
¡û
>C181060623
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
2418227
2418299
+
Lys
CTT
-
¡û
>C191013118
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
2360842
2360915
+
Lys
CTT
-
¡û
>C191013183
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
2273026
2273099
+
Lys
CTT
-
¡û
>C191013249
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
2143605
2143678
+
Lys
CTT
-
¡û
>C191013314
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
2280726
2280799
+
Lys
CTT
-
¡û
>C191013379
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
2291029
2291102
+
Lys
CTT
-
¡û
>C191013444
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
2291029
2291102
+
Lys
CTT
-
¡û
>C191128658
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
2283120
2283193
+
Lys
CTT
-
¡û
>W141695204
JMCB01000015
Myxococcota
Hyalangium minutum [JMCB]
205247
205320
+
Lys
CTT
[ENA]
¡û
>W141695234
JMCC01000022
Myxococcota
Enhygromyxa salina [JMCC]
83464
83537
+
Lys
CTT
[ENA]
¡û
>W141806672
JPMI01000247
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
20649
20574
-
Lys
CTT
[ENA]
¡û
>W1911701621
QNUN01000016
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
151423
151351
-
Lys
CTT
[ENA]
¡û
>W1810452236
PZOX01000021
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
118817
118744
-
Lys
CTT
[ENA]
¡û
>W1810884678
QUMU01000003
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
528608
528680
+
Lys
CTT
[ENA]
¡û
>C151008168
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
3023966
3024038
+
Lys
CTT
[Ensembl]
¡û
>C151083551
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
4086644
4086719
+
Lys
CTT
[Ensembl]
¡û
>C151091037
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
6214145
6214072
-
Lys
CTT
[Ensembl]
¡û
>C11114311
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
4219469
4219542
+
Lys
CTT
[Ensembl]
¡û
>C11119108
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
3416944
3417018
+
Lys
CTT
[Ensembl]
¡û
>C121012057
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
2421994
2422067
+
Lys
CTT
[Ensembl]
¡û
>W121102867
AKXT01000022
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
113238
113311
+
Lys
CTT
[ENA]
¡û
>W121103132
AKYI01001373
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
2550
2477
-
Lys
CTT
[ENA]
¡û
>C131011656
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
2895897
2895970
+
Lys
CTT
[Ensembl]
¡û
>W1710513719
FNAJ01000009
Myxococcota
Myxococcus virescens [FNAJ]
189959
190032
+
Lys
CTT
[ENA]
¡û
>W1710529828
FNOH01000016
Myxococcota
Myxococcus xanthus [FNOH]
93772
93699
-
Lys
CTT
[ENA]
¡û
>W1710544101
FOAP01000001
Myxococcota
Stigmatella aurantiaca [FOAP]
694491
694565
+
Lys
CTT
[ENA]
¡û
>W1710554008
FOIB01000011
Myxococcota
Myxococcus fulvus [FOIB]
129077
129149
+
Lys
CTT
[ENA]
¡û
>W1710554365
FOIJ01000020
Myxococcota
Stigmatella erecta [FOIJ]
83506
83580
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK