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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240023 (58 seq.)
>W1711629781
MPPI01000011
Cyanobacteriota
Phormidesmis priestleyi ULC007 [MPPI]
12847
12774
-
Arg
ACG
[ENA]
¡û
>C171000063
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
32175
32102
-
Arg
ACG
-
¡û
>C171000126
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
32175
32102
-
Arg
ACG
-
¡û
>C171064228
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
584454
584381
-
Arg
ACG
-
¡û
>W131166609
ARCP01000005
Cyanobacteriota
filamentous cyanobacterium ESFC-1 [ARCP]
113803
113730
-
Arg
ACG
[ENA]
¡û
>W141004305
AFXD01000052
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
58989
58916
-
Arg
ACG
[ENA]
¡û
>W141091935
AUZM01000011
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
3734
3661
-
Arg
ACG
[ENA]
¡û
>W08011536
ABVJ01000009
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
123185
123112
-
Arg
ACG
[ENA]
¡û
>W141096812
AVFV01000083
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
3801
3874
+
Arg
ACG
[ENA]
¡û
>W141096877
AVFX01000012
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
42486
42559
+
Arg
ACG
[ENA]
¡û
>WENV181234532
OFEU01000294
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
19596
19669
+
Arg
ACG
[ENA]
¡û
>WENV183702483
PDVI01000364
[PDVI] alkali sediment metagenome; glacial lake sediment
5707
5634
-
Arg
ACG
[ENA]
¡û
>WENV170133807
CENU01052761
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
161
86
-
Arg
ACG
[ENA]
¡û
>WENV170516473
CEWB01125589
[CEWB] marine metagenome genome assembly TARA_068_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
94
19
-
Arg
ACG
[ENA]
¡û
>WENV170533195
CEWO01105650
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3038
3113
+
Arg
ACG
[ENA]
¡û
>WENV170805151
MDSW01060066
[MDSW] marine metagenome; seawater
4187
4262
+
Arg
ACG
[ENA]
¡û
>WENV170818997
MDSX01083525
[MDSX] marine metagenome; seawater
3085
3160
+
Arg
ACG
[ENA]
¡û
>WENV170827989
MDSY01140517
[MDSY] marine metagenome; seawater
2
75
+
Arg
ACG
[ENA]
¡û
>WENV170872468
MDTB01218432
[MDTB] marine metagenome; seawater
52249
52174
-
Arg
ACG
[ENA]
¡û
>CHL1810000548
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
49830
49903
+
Arg
ACG
[ENA]
¡û
>CHL1810014962
KM462877
Viridiplantae
Gloeotilopsis sterilis (KM462877)
111029
110956
-
Arg
ACG
[ENA]
¡û
>CHL1810040791
KY407660
Viridiplantae
Neodangemannia microcystis (KY407660)
8221
8297
+
Arg
ACG
[ENA]
¡û
>C181004810
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
647515
647588
+
Arg
ACG
-
¡û
>W141701077
JMKF01000028
Cyanobacteriota
[Leptolyngbya] sp. JSC-1 JSC-1 [JMKF]
57832
57905
+
Arg
ACG
[ENA]
¡û
>C09103572
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
1001694
1001767
+
Arg
ACG
[Ensembl]
¡û
>W1910194183
CZCT02000074
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
30612
30539
-
Arg
ACG
[ENA]
¡û
>W2010088447
BIMW01000075
Cyanobacteriota
Arthrospira platensis NIES-46 [BIMW]
51004
50931
-
Arg
ACG
[ENA]
¡û
>W2010372580
CZCT02000074
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
30612
30539
-
Arg
ACG
[ENA]
¡û
>W2110142719
JAAHBQ010000082
Cyanobacteriota
Oscillatoria salina IIICB1 [JAAHBQ]
5446
5371
-
Arg
ACG
[ENA]
¡û
>W2110217292
JACGXW010000084
Cyanobacteriota
Limnospira fusiformis KN [JACGXW]
22559
22632
+
Arg
ACG
[ENA]
¡û
>W2110226487
JACJOA010000047
Cyanobacteriota
Coleofasciculus sp. FACHB-501 [JACJOA]
29924
29851
-
Arg
ACG
[ENA]
¡û
>W2110226544
JACJOB010000045
Cyanobacteriota
Cyanobacteria bacterium FACHB-472 [JACJOB]
75318
75245
-
Arg
ACG
[ENA]
¡û
>W2110226948
JACJOI010000022
Cyanobacteriota
Coleofasciculus sp. FACHB-125 [JACJOI]
166094
166167
+
Arg
ACG
[ENA]
¡û
>W2110227391
JACJOQ010000249
Cyanobacteriota
Coleofasciculus sp. FACHB-712 [JACJOQ]
91
18
-
Arg
ACG
[ENA]
¡û
>W2110227540
JACJOT010000008
Cyanobacteriota
Microcoleus sp. FACHB-68 [JACJOT]
1436477
1436404
-
Arg
ACG
[ENA]
¡û
>W2110228095
JACJPD010000038
Cyanobacteriota
Microcoleus sp. FACHB-53 [JACJPD]
45662
45589
-
Arg
ACG
[ENA]
¡û
>W2110230478
JACJRA010000024
Cyanobacteriota
Desertifilum sp. FACHB-866 [JACJRA]
60833
60906
+
Arg
ACG
[ENA]
¡û
>W2110231774
JACJSA010000007
Cyanobacteriota
Oscillatoria sp. FACHB-1407 [JACJSA]
235278
235205
-
Arg
ACG
[ENA]
¡û
>W2110232319
JACJSL010000020
Cyanobacteriota
Coleofasciculus sp. FACHB-SPT36 [JACJSL]
70757
70830
+
Arg
ACG
[ENA]
¡û
>W2110311670
JADEWU010000010
Cyanobacteriota
Planktothrix mougeotii LEGE 06226 [JADEWU]
71707
71780
+
Arg
ACG
[ENA]
¡û
>W2110312605
JADEXN010000021
Cyanobacteriota
Oscillatoriales cyanobacterium LEGE 11467 [JADEXN]
1865
1792
-
Arg
ACG
[ENA]
¡û
>W2110313026
JADEXW010000571
Cyanobacteriota
Pseudanabaenaceae cyanobacterium LEGE 13415 [JADEXW]
2128
2055
-
Arg
ACG
[ENA]
¡û
>C201246908
CP051185
Cyanobacteriota
Limnospira fusiformis SAG 85.79 [CP051185]
2358028
2357955
-
Arg
ACG
-
¡û
>W2110736377
JAJDMN010000003
Cyanobacteriota
Planktothrix agardhii 1813 [JAJDMN]
27244
27171
-
Arg
ACG
[ENA]
¡û
>W2110736450
JAJDMP010000006
Cyanobacteriota
Planktothrix agardhii 1809 [JAJDMP]
236574
236501
-
Arg
ACG
[ENA]
¡û
>W2110736541
JAJDMS010000001
Cyanobacteriota
Planktothrix agardhii 1025 [JAJDMS]
4186755
4186682
-
Arg
ACG
[ENA]
¡û
>C231025134
AP026075
Cyanobacteriota
Acaryochloris marina MBIC10699 [AP026075]
3476853
3476780
-
Arg
ACG
-
¡û
>W10111324
ADDH01000009
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
61998
62071
+
Arg
ACG
[ENA]
¡û
>C231123284
CP071717
Cyanobacteriota
Acaryochloris sp. 'Moss Beach' [CP071717]
96511
96438
-
Arg
ACG
-
¡û
>C231651889
LR882952
Cyanobacteriota
Planktothrix agardhii No.976 [LR882952]
105016
104943
-
Arg
ACG
-
¡û
>C231651986
LR882967
Cyanobacteriota
Planktothrix pseudagardhii No.713 [LR882967]
4964997
4965070
+
Arg
ACG
-
¡û
>W11114267
ADDH01000009
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
61998
62071
+
Arg
ACG
[ENA]
¡û
>W1511585659
LAYT01000069
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
126614
126541
-
Arg
ACG
[ENA]
¡û
>W11160111
AFEJ01000041
Cyanobacteriota
Acaryochloris sp. CCMEE 5410 [AFEJ]
20769
20842
+
Arg
ACG
[ENA]
¡û
>C161002683
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
5992655
5992582
-
Arg
ACG
[Ensembl]
¡û
>C161103146
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
3253379
3253452
+
Arg
ACG
-
¡û
>C131004681
CP003607
Cyanobacteriota
Oscillatoria acuminata PCC 6304 [CP003607]
3688644
3688571
-
Arg
ACG
[Ensembl]
¡û
>C131004899
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
1326874
1326801
-
Arg
ACG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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