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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240098 (22 seq.)
>W1711078867
LSNG01000049
Bacillota
Lactobacillus johnsonii [LSNG]
6404
6330
-
Asp
GTC
[ENA]
¡û
>W1711790991
MWIK01000039
Bacillota
Lactobacillus johnsonii [MWIK]
6538
6464
-
Asp
GTC
[ENA]
¡û
>C171048934
CP016400
Bacillota
Lactobacillus johnsonii BS15 [CP016400]
938783
938709
-
Asp
GTC
-
¡û
>C011882
AE017198
Bacillota
Lactobacillus johnsonii NCC 533 [AE017198]
1678034
1677962
-
Asp
GTC
[Ensembl]
¡û
>WENV181271470
OFGF01041336
[OFGF] mouse gut metagenome; faeces
613
687
+
Asp
GTC
[ENA]
¢þ
>WENV183723045
PDYJ01000072
[PDYJ] gut metagenome; fecal pellets
10278
10352
+
Asp
GTC
[ENA]
¢þ
>C181181883
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
1645245
1645319
+
Asp
GTC
-
¡û
>C191093498
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1700881
1700807
-
Asp
GTC
-
¡û
>C141008690
CP006811
Bacillota
Lactobacillus johnsonii N6.2 [CP006811]
1587029
1586955
-
Asp
GTC
[Ensembl]
¡û
>W1910901502
NGOD01000012
Bacillota
Lactobacillus johnsonii 117x [NGOD]
3008
3082
+
Asp
GTC
[ENA]
¡û
>W1910901553
NGOE01000016
Bacillota
Lactobacillus johnsonii 117q [NGOE]
3008
3082
+
Asp
GTC
[ENA]
¡û
>W1910901606
NGOF01000013
Bacillota
Lactobacillus johnsonii 117k [NGOF]
3008
3082
+
Asp
GTC
[ENA]
¡û
>W1910901655
NGOG01000014
Bacillota
Lactobacillus johnsonii 117d [NGOG]
3008
3082
+
Asp
GTC
[ENA]
¡û
>W1910901716
NGOH01000051
Bacillota
Lactobacillus johnsonii 117c [NGOH]
3008
3082
+
Asp
GTC
[ENA]
¡û
>W1910901759
NGOI01000014
Bacillota
Lactobacillus johnsonii 117a [NGOI]
3008
3082
+
Asp
GTC
[ENA]
¡û
>W1810116123
PHNP01000008
Bacillota
Lactobacillus johnsonii DPPM [PHNP]
6310
6236
-
Asp
GTC
[ENA]
¡û
>W11300422
ADDY01000037
Bacillota
Lactobacillus gasseri SV-16A-US [ADDY]
1499
1573
+
Asp
GTC
[ENA]
¡û
>W11300423
ADDY01000038
Bacillota
Lactobacillus gasseri SV-16A-US [ADDY]
64
138
+
Asp
GTC
[ENA]
¡û
>W11300424
ADDY01000040
Bacillota
Lactobacillus gasseri SV-16A-US [ADDY]
979
1053
+
Asp
GTC
[ENA]
¡û
>W11300425
ADDY01000042
Bacillota
Lactobacillus gasseri SV-16A-US [ADDY]
78
152
+
Asp
GTC
[ENA]
¡û
>C11112953
CP002464
Bacillota
Lactobacillus johnsonii DPC 6026 [CP002464]
1662021
1661947
-
Asp
GTC
[Ensembl]
¡û
>W1610917777
LSNG01000049
Bacillota
Lactobacillus johnsonii [LSNG]
6404
6330
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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