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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240536 (123 seq.)
>W1711361350
MDLC01000065
Gammaproteobacteria
Candidatus Endobugula sertula [MDLC]
2081
2006
-
Lys
TTT
[ENA]
¡û
>W1711425103
MIEQ01000022
Gammaproteobacteria
Motiliproteus sp. MSK22-1 [MIEQ]
141779
141854
+
Lys
TTT
[ENA]
¡û
>W1711425104
MIEQ01000022
Gammaproteobacteria
Motiliproteus sp. MSK22-1 [MIEQ]
141910
141985
+
Lys
TTT
[ENA]
¡û
>W1711425115
MIEQ01000025
Gammaproteobacteria
Motiliproteus sp. MSK22-1 [MIEQ]
92622
92547
-
Lys
TTT
[ENA]
¡û
>W1711425116
MIEQ01000025
Gammaproteobacteria
Motiliproteus sp. MSK22-1 [MIEQ]
92511
92436
-
Lys
TTT
[ENA]
¡û
>WENV180101568
OAOV01012901
[OAOV] marine metagenome; ENVO:00002010
218
293
+
Lys
TTT
[ENA]
¢þ
>WENV180113811
OAPR01028894
[OAPR] marine metagenome; seawater
402
477
+
Lys
TTT
[ENA]
¢þ
>WENV180299755
OBJC01110177
[OBJC] metagenome; water
35
110
+
Lys
TTT
[ENA]
¢þ
>WENV180356887
OBNL01064772
[OBNL] marine metagenome; ENVO:00002010
259
184
-
Lys
TTT
[ENA]
¢þ
>WENV180367628
OBOE01185128
[OBOE] marine metagenome; ENVO:00002010
259
184
-
Lys
TTT
[ENA]
¢þ
>WENV180383513
OBOU01132333
[OBOU] marine metagenome; ENV:00002010
175
250
+
Lys
TTT
[ENA]
¢þ
>WENV180383644
OBOV01003931
[OBOV] marine metagenome; ENV:00002010
944
869
-
Lys
TTT
[ENA]
¢þ
>WENV180383645
OBOV01003931
[OBOV] marine metagenome; ENV:00002010
729
654
-
Lys
TTT
[ENA]
¢þ
>WENV180396476
OBPV01007862
[OBPV] marine metagenome; ENVO:00002010
670
595
-
Lys
TTT
[ENA]
¢þ
>WENV180585102
OCOK01002852
[OCOK] marine metagenome; ENVO:00002010
422
347
-
Lys
TTT
[ENA]
¢þ
>WENV180590317
OCOT01000080
[OCOT] marine metagenome; ENVO:00002010
3277
3202
-
Lys
TTT
[ENA]
¢þ
>WENV181313705
OFJH01001607
[OFJH] marine metagenome; seawater
737
662
-
Lys
TTT
[ENA]
¢þ
>WENV181313706
OFJH01001607
[OFJH] marine metagenome; seawater
522
447
-
Lys
TTT
[ENA]
¢þ
>WENV181319238
OFKD01001422
[OFKD] marine metagenome; seawater
52
127
+
Lys
TTT
[ENA]
¢þ
>WENV181325401
OFLJ01000331
[OFLJ] seawater metagenome; seawater
3381
3306
-
Lys
TTT
[ENA]
¢þ
>WENV181391140
OFRQ01044914
[OFRQ] seawater metagenome; seawater
410
335
-
Lys
TTT
[ENA]
¢þ
>WENV181392099
OFRW01001220
[OFRW] seawater metagenome; seawater
1949
2024
+
Lys
TTT
[ENA]
¢þ
>WENV182540696
OJAP01000184
[OJAP] seawater metagenome; Sea water
7000
7075
+
Lys
TTT
[ENA]
¢þ
>WENV182541736
OJAU01000867
[OJAU] seawater metagenome; Sea water
908
983
+
Lys
TTT
[ENA]
¢þ
>WENV182542084
OJAV01002109
[OJAV] seawater metagenome; Sea water
2298
2373
+
Lys
TTT
[ENA]
¢þ
>WENV182542383
OJAY01000299
[OJAY] seawater metagenome; Sea water
141
216
+
Lys
TTT
[ENA]
¢þ
>WENV182542465
OJAY01002338
[OJAY] seawater metagenome; Sea water
3431
3506
+
Lys
TTT
[ENA]
¢þ
>WENV182543165
OJBA01001357
[OJBA] seawater metagenome; Sea water
313
388
+
Lys
TTT
[ENA]
¢þ
>WENV182544016
OJBE01000010
[OJBE] seawater metagenome; Sea water
141537
141612
+
Lys
TTT
[ENA]
¢þ
>WENV182544017
OJBE01000010
[OJBE] seawater metagenome; Sea water
141698
141773
+
Lys
TTT
[ENA]
¢þ
>WENV182545882
OJBO01000012
[OJBO] seawater metagenome; Sea water
78566
78491
-
Lys
TTT
[ENA]
¢þ
>WENV182547137
OJBR01002039
[OJBR] seawater metagenome; Sea water
3416
3491
+
Lys
TTT
[ENA]
¢þ
>WENV182547169
OJBR01004279
[OJBR] seawater metagenome; Sea water
141
216
+
Lys
TTT
[ENA]
¢þ
>WENV182548133
OJBV01000686
[OJBV] seawater metagenome; Sea water
2928
2853
-
Lys
TTT
[ENA]
¢þ
>WENV182549639
OJBY01004309
[OJBY] seawater metagenome; Sea water
1259
1334
+
Lys
TTT
[ENA]
¢þ
>WENV182549975
OJBZ01001079
[OJBZ] seawater metagenome; Sea water
3326
3401
+
Lys
TTT
[ENA]
¢þ
>WENV182550577
OJCA01012565
[OJCA] seawater metagenome; Sea water
194
269
+
Lys
TTT
[ENA]
¢þ
>WENV182551217
OJCC01000008
[OJCC] seawater metagenome; Sea water
13823
13748
-
Lys
TTT
[ENA]
¢þ
>WENV182554179
OJCT01008834
[OJCT] seawater metagenome; Sea water
739
814
+
Lys
TTT
[ENA]
¢þ
>WENV182554285
OJCU01000553
[OJCU] seawater metagenome; Sea water
1513
1588
+
Lys
TTT
[ENA]
¢þ
>WENV182559542
OJDQ01000102
[OJDQ] seawater metagenome; Sea water
44809
44884
+
Lys
TTT
[ENA]
¢þ
>WENV182559543
OJDQ01000102
[OJDQ] seawater metagenome; Sea water
44970
45045
+
Lys
TTT
[ENA]
¢þ
>WENV182562219
OJDZ01000118
[OJDZ] seawater metagenome; Sea water
141
216
+
Lys
TTT
[ENA]
¢þ
>WENV182562249
OJDZ01000254
[OJDZ] seawater metagenome; Sea water
34298
34373
+
Lys
TTT
[ENA]
¢þ
>WENV182562753
OJEA01001171
[OJEA] seawater metagenome; Sea water
3094
3019
-
Lys
TTT
[ENA]
¢þ
>WENV182563663
OJEC01011564
[OJEC] seawater metagenome; Sea water
807
732
-
Lys
TTT
[ENA]
¢þ
>WENV182564983
OJEF01022759
[OJEF] seawater metagenome; Sea water
141
216
+
Lys
TTT
[ENA]
¢þ
>WENV182565241
OJEH01000630
[OJEH] seawater metagenome; Sea water
7326
7251
-
Lys
TTT
[ENA]
¢þ
>WENV182565242
OJEH01000630
[OJEH] seawater metagenome; Sea water
7111
7036
-
Lys
TTT
[ENA]
¢þ
>WENV182566792
OJEM01005390
[OJEM] seawater metagenome; Sea water
1689
1614
-
Lys
TTT
[ENA]
¢þ
>WENV182566793
OJEM01005390
[OJEM] seawater metagenome; Sea water
1528
1453
-
Lys
TTT
[ENA]
¢þ
>WENV182568464
OJEU01001365
[OJEU] seawater metagenome; Sea water
931
1006
+
Lys
TTT
[ENA]
¢þ
>WENV182568659
OJEW01000107
[OJEW] seawater metagenome; Sea water
268
193
-
Lys
TTT
[ENA]
¢þ
>WENV182569372
OJEZ01000023
[OJEZ] seawater metagenome; Sea water
29658
29733
+
Lys
TTT
[ENA]
¢þ
>WENV182570276
OJFC01000737
[OJFC] seawater metagenome; Sea water
3162
3237
+
Lys
TTT
[ENA]
¢þ
>WENV182570756
OJFF01000291
[OJFF] seawater metagenome; Sea water
194
269
+
Lys
TTT
[ENA]
¢þ
>WENV182571483
OJFK01000106
[OJFK] seawater metagenome; Sea water
18452
18377
-
Lys
TTT
[ENA]
¢þ
>WENV182574054
OJFQ01015147
[OJFQ] seawater metagenome; Sea water
105
180
+
Lys
TTT
[ENA]
¢þ
>WENV182575489
OJFV01000002
[OJFV] seawater metagenome; Sea water
170105
170030
-
Lys
TTT
[ENA]
¢þ
>WENV182578112
OJGM01002198
[OJGM] seawater metagenome; Sea water
1444
1369
-
Lys
TTT
[ENA]
¢þ
>WENV182578382
OJGN01002258
[OJGN] seawater metagenome; Sea water
555
480
-
Lys
TTT
[ENA]
¢þ
>WENV182583865
OJHF01000193
[OJHF] seawater metagenome; Sea water
16786
16711
-
Lys
TTT
[ENA]
¢þ
>WENV182587119
OJHL01001274
[OJHL] seawater metagenome; Sea water
1621
1546
-
Lys
TTT
[ENA]
¢þ
>WENV182587307
OJHM01000330
[OJHM] seawater metagenome; Sea water
268
193
-
Lys
TTT
[ENA]
¢þ
>WENV182589703
OJIG01000059
[OJIG] seawater metagenome; Sea water
194
269
+
Lys
TTT
[ENA]
¢þ
>WENV182589747
OJIG01000179
[OJIG] seawater metagenome; Sea water
7021
7096
+
Lys
TTT
[ENA]
¢þ
>WENV182590035
OJIH01000029
[OJIH] seawater metagenome; Sea water
18026
18101
+
Lys
TTT
[ENA]
¢þ
>WENV182590486
OJII01006384
[OJII] seawater metagenome; Sea water
437
362
-
Lys
TTT
[ENA]
¢þ
>WENV182592120
OJIQ01000205
[OJIQ] seawater metagenome; Sea water
2509
2584
+
Lys
TTT
[ENA]
¢þ
>WENV182594190
OJIV01001282
[OJIV] seawater metagenome; Sea water
8413
8338
-
Lys
TTT
[ENA]
¢þ
>WENV183055203
OLGX01000147
[OLGX] seawater metagenome; Sea water
141
216
+
Lys
TTT
[ENA]
¢þ
>WENV183055243
OLGX01000297
[OLGX] seawater metagenome; Sea water
21188
21263
+
Lys
TTT
[ENA]
¢þ
>WENV183055736
OLHF01001254
[OLHF] seawater metagenome; Sea water
200
275
+
Lys
TTT
[ENA]
¢þ
>WENV183055799
OLHH01000432
[OLHH] seawater metagenome; Sea water
4128
4203
+
Lys
TTT
[ENA]
¢þ
>WENV183057318
OLHL01000349
[OLHL] seawater metagenome; Sea water
23357
23432
+
Lys
TTT
[ENA]
¢þ
>WENV183057319
OLHL01000349
[OLHL] seawater metagenome; Sea water
23518
23593
+
Lys
TTT
[ENA]
¢þ
>WENV183059150
OLHT01000092
[OLHT] seawater metagenome; Sea water
272
197
-
Lys
TTT
[ENA]
¢þ
>WENV183059585
OLHV01000028
[OLHV] seawater metagenome; Sea water
216
141
-
Lys
TTT
[ENA]
¢þ
>WENV183059622
OLHV01000081
[OLHV] seawater metagenome; Sea water
52363
52288
-
Lys
TTT
[ENA]
¢þ
>WENV183060410
OLHX01008899
[OLHX] seawater metagenome; Sea water
772
697
-
Lys
TTT
[ENA]
¢þ
>WENV183522118
OMOM01000126
[OMOM] seawater metagenome; Sea water
17463
17388
-
Lys
TTT
[ENA]
¢þ
>WENV183619265
OOFQ01000325
[OOFQ] marine metagenome; seawater
3381
3306
-
Lys
TTT
[ENA]
¢þ
>WENV183623035
OOFX01003125
[OOFX] marine metagenome; sea ice
394
319
-
Lys
TTT
[ENA]
¢þ
>WENV183625112
OOGF01000769
[OOGF] marine metagenome; seawater
430
355
-
Lys
TTT
[ENA]
¢þ
>WENV183625113
OOGF01000769
[OOGF] marine metagenome; seawater
215
140
-
Lys
TTT
[ENA]
¢þ
>WENV183626246
OOGH01045610
[OOGH] marine metagenome; seawater
410
335
-
Lys
TTT
[ENA]
¢þ
>WENV183626421
OOGI01003510
[OOGI] marine metagenome; seawater
822
897
+
Lys
TTT
[ENA]
¢þ
>WENV183626720
OOGJ01018032
[OOGJ] marine metagenome; seawater
323
248
-
Lys
TTT
[ENA]
¢þ
>WENV183626809
OOGK01001262
[OOGK] marine metagenome; seawater
1949
2024
+
Lys
TTT
[ENA]
¢þ
>WENV183630332
OOGS01004180
[OOGS] marine metagenome; seawater
727
802
+
Lys
TTT
[ENA]
¢þ
>WENV170296621
CESE01028894
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
450
375
-
Lys
TTT
[ENA]
¢þ
>WENV170538453
CEWR01081875
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
168
243
+
Lys
TTT
[ENA]
¢þ
>WENV170567442
FLMP01000573
[FLMP] seawater metagenome; seawater
11190
11115
-
Lys
TTT
[ENA]
¢þ
>WENV170567443
FLMP01000573
[FLMP] seawater metagenome; seawater
10975
10900
-
Lys
TTT
[ENA]
¢þ
>WENV170613330
FUWD012796914
[FUWD] metagenome; unknown
527
452
-
Lys
TTT
[ENA]
¢þ
>WENV170613331
FUWD012796914
[FUWD] metagenome; unknown
312
237
-
Lys
TTT
[ENA]
¢þ
>WENV170625096
FUWD013191569
[FUWD] metagenome; unknown
9793
9718
-
Lys
TTT
[ENA]
¢þ
>WENV170633353
FUWD013394854
[FUWD] metagenome; unknown
9793
9718
-
Lys
TTT
[ENA]
¢þ
>WENV170646759
JQIA01002743
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
9324
9397
+
Lys
TTT
[ENA]
¢þ
>WENV170764109
LWDU01030384
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
582
657
+
Lys
TTT
[ENA]
¢þ
>WENV170782653
MAAC01011118
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
128241
128316
+
Lys
TTT
[ENA]
¢þ
>WENV170821020
MDSY01014938
[MDSY] marine metagenome; seawater
292
217
-
Lys
TTT
[ENA]
¢þ
>WENV170821021
MDSY01014938
[MDSY] marine metagenome; seawater
77
2
-
Lys
TTT
[ENA]
¢þ
>WENV170824802
MDSY01082501
[MDSY] marine metagenome; seawater
23
98
+
Lys
TTT
[ENA]
¢þ
>WENV170953764
MEHZ011662868
[MEHZ] marine metagenome; marine surface water
971
896
-
Lys
TTT
[ENA]
¢þ
>WENV170953806
MEHZ011664439
[MEHZ] marine metagenome; marine surface water
20
95
+
Lys
TTT
[ENA]
¢þ
>C181010975
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1107194
1107269
+
Lys
TTT
-
¡û
>C181010976
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1107331
1107406
+
Lys
TTT
-
¡û
>W141777022
JOMR01000001
Gammaproteobacteria
Thiomicrospira pelophila DSM 1534 [JOMR]
1002588
1002663
+
Lys
TTT
[ENA]
¡û
>W1911748732
QWEZ01000001
Gammaproteobacteria
Aestuariirhabdus litorea GTF13 [QWEZ]
709939
710014
+
Lys
TTT
[ENA]
¡û
>W1911748778
QWEZ01000002
Gammaproteobacteria
Aestuariirhabdus litorea GTF13 [QWEZ]
1197217
1197292
+
Lys
TTT
[ENA]
¡û
>C151016206
CP007030
Gammaproteobacteria
Thiomicrospira aerophila AL3 [CP007030]
805297
805372
+
Lys
TTT
[Ensembl]
¡û
>C151017314
CP007142
Gammaproteobacteria
Gynuella sunshinyii YC6258 [CP007142]
2627260
2627335
+
Lys
TTT
[Ensembl]
¡û
>C151017315
CP007142
Gammaproteobacteria
Gynuella sunshinyii YC6258 [CP007142]
2627418
2627493
+
Lys
TTT
[Ensembl]
¡û
>ENV09004278
ADKQ01001127
Marine metagenome apWin_C1
457
382
-
Lys
TTT
[ENA]
¡û
>C11122544
CP002776
Gammaproteobacteria
Thiomicrospira cyclica ALM1 [CP002776]
1165261
1165186
-
Lys
TTT
[Ensembl]
¡û
>W1511534020
JYNN01000014
Gammaproteobacteria
Thiomicrospira microaerophila ASL8-2 [JYNN]
67343
67268
-
Lys
TTT
[ENA]
¡û
>W1511576956
LAQF01000008
Gammaproteobacteria
Oceanospirillaceae bacterium ASP10-02a [LAQF]
35419
35494
+
Lys
TTT
[ENA]
¡û
>W1511576957
LAQF01000008
Gammaproteobacteria
Oceanospirillaceae bacterium ASP10-02a [LAQF]
35618
35693
+
Lys
TTT
[ENA]
¡û
>W11150199
AEVK01000185
Gammaproteobacteria
gamma proteobacterium IMCC1989 [AEVK]
1759
1834
+
Lys
TTT
[ENA]
¡û
>W11178516
AGFA01000001
Gammaproteobacteria
Thiomicrospira aerophila AL3 [AGFA]
173421
173346
-
Lys
TTT
[ENA]
¡û
>WENV074396
AACY023973401
Marine microbial communities from Global Ocean Sampling (GOS)
207
284
+
Lys
TTT
[ENA]
>WENV074397
AACY023973401
Marine microbial communities from Global Ocean Sampling (GOS)
422
499
+
Lys
TTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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