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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240638 (114 seq.)
>W1710894075
LNFJ01000046
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
13836
13913
+
Val
TAC
[ENA]
¡û
>W1711503835
MKTZ01000005
Bacteroidota
Sphingobacteriales bacterium 50-39 [MKTZ]
15958
16035
+
Val
TAC
[ENA]
¡û
>W1711504010
MKUD01000052
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
44207
44284
+
Val
TAC
[ENA]
¡û
>W1711510299
MLAV01000036
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
46830
46907
+
Val
TAC
[ENA]
¡û
>W1711510300
MLAV01000036
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
46966
47041
+
Val
TAC
[ENA]
¡û
>W1711769455
MVEC01000004
Bacteroidota
Spirosoma sp. 209 [MVEC]
117527
117450
-
Val
TAC
[ENA]
¡û
>W1712049989
NFUV01000001
Bacteroidota
Chitinophagaceae bacterium IBVUCB2 [NFUV]
603846
603921
+
Val
TAC
[ENA]
¡û
>C171030760
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
199167
199090
-
Val
TAC
-
¡û
>C171104379
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
1035954
1036031
+
Val
TAC
-
¡û
>W131169817
ARFA01000021
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
62192
62269
+
Val
TAC
[ENA]
¡û
>W131170012
ARFF01000009
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
358943
359020
+
Val
TAC
[ENA]
¡û
>WENV181165437
OEIR01837209
[OEIR] soil metagenome; soil
122
47
-
Val
TAC
[ENA]
¢þ
>WENV181307865
OFIS01000008
[OFIS] sludge metagenome; sludge
11376
11301
-
Val
TAC
[ENA]
¢þ
>WENV181307866
OFIS01000008
[OFIS] sludge metagenome; sludge
10437
10362
-
Val
TAC
[ENA]
¢þ
>WENV181311881
OFJB01018893
[OFJB] sludge metagenome; sludge
733
658
-
Val
TAC
[ENA]
¢þ
>WENV181401906
OFTX01019111
[OFTX] sludge metagenome; sludge
120
45
-
Val
TAC
[ENA]
¢þ
>WENV181402253
OFTY01000335
[OFTY] sludge metagenome; sludge
37865
37940
+
Val
TAC
[ENA]
¢þ
>WENV181402254
OFTY01000335
[OFTY] sludge metagenome; sludge
38804
38879
+
Val
TAC
[ENA]
¢þ
>WENV181854209
OGWJ01027008
[OGWJ] freshwater metagenome; freshwater
324
249
-
Val
TAC
[ENA]
¢þ
>WENV170013872
AVBS01004801
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
149
224
+
Val
TAC
[ENA]
¢þ
>WENV170556192
CXWL01005523
[CXWL] groundwater metagenome; biofilm material
46309
46384
+
Val
TAC
[ENA]
¢þ
>WENV170650811
JRYE01024914
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
10929
11004
+
Val
TAC
[ENA]
¢þ
>W09109906
ABUR01000002
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
88140
88063
-
Val
TAC
[ENA]
¡û
>WENV170980845
MWVT01003375
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
153
78
-
Val
TAC
[ENA]
¢þ
>WENV170980912
MWVT01007689
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
122
45
-
Val
TAC
[ENA]
¢þ
>WENV170981037
MWVT01019274
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
37
114
+
Val
TAC
[ENA]
¢þ
>WENV170981088
MWVT01026089
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
182
105
-
Val
TAC
[ENA]
¢þ
>WENV170982095
MWVU01012481
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
388
313
-
Val
TAC
[ENA]
¢þ
>WENV170983779
MWVV01088645
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
341
264
-
Val
TAC
[ENA]
¢þ
>WENV170984327
MWVV01238832
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
308
383
+
Val
TAC
[ENA]
¢þ
>WENV170984724
MWVV01406579
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
218
143
-
Val
TAC
[ENA]
¢þ
>WENV170984831
MWVW01000505
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
8545
8620
+
Val
TAC
[ENA]
¢þ
>WENV170984912
MWVW01003367
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
325
402
+
Val
TAC
[ENA]
¢þ
>WENV170985456
MWVW01111811
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
130
53
-
Val
TAC
[ENA]
¢þ
>WENV170985706
MWVX01000788
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1543
1466
-
Val
TAC
[ENA]
¢þ
>WENV170985939
MWVX01007832
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
3155
3232
+
Val
TAC
[ENA]
¢þ
>WENV170985985
MWVX01010187
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
2011
1936
-
Val
TAC
[ENA]
¢þ
>WENV170986114
MWVX01016641
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1304
1227
-
Val
TAC
[ENA]
¢þ
>WENV170986219
MWVX01022397
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
293
216
-
Val
TAC
[ENA]
¢þ
>WENV170986318
MWVX01030070
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1572
1497
-
Val
TAC
[ENA]
¢þ
>WENV170986394
MWVX01036207
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
928
1005
+
Val
TAC
[ENA]
¢þ
>WENV170986466
MWVX01042335
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
728
651
-
Val
TAC
[ENA]
¢þ
>WENV170986562
MWVX01052105
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
860
785
-
Val
TAC
[ENA]
¢þ
>WENV170986584
MWVX01053597
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
337
260
-
Val
TAC
[ENA]
¢þ
>WENV170986656
MWVX01061956
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
322
397
+
Val
TAC
[ENA]
¢þ
>WENV170986688
MWVX01066912
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
776
699
-
Val
TAC
[ENA]
¢þ
>WENV170986710
MWVX01069615
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
270
345
+
Val
TAC
[ENA]
¢þ
>WENV170987059
MWVX01116074
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
73
150
+
Val
TAC
[ENA]
¢þ
>WENV170987257
MWVX01155885
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
212
289
+
Val
TAC
[ENA]
¢þ
>WENV170987433
MWVX01190046
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
496
421
-
Val
TAC
[ENA]
¢þ
>WENV170987737
MWVX01258587
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
28
105
+
Val
TAC
[ENA]
¢þ
>WENV170988395
MWVX01479034
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
260
183
-
Val
TAC
[ENA]
¢þ
>WENV170988486
MWVX01514137
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
89
164
+
Val
TAC
[ENA]
¢þ
>WENV170988690
MWVY01000063
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
19357
19282
-
Val
TAC
[ENA]
¢þ
>WENV170988857
MWVY01016825
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
344
421
+
Val
TAC
[ENA]
¢þ
>WENV170989349
MWVZ01016999
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
493
416
-
Val
TAC
[ENA]
¢þ
>WENV170989410
MWVZ01025256
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
990
913
-
Val
TAC
[ENA]
¢þ
>WENV170989634
MWVZ01068634
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
518
595
+
Val
TAC
[ENA]
¢þ
>WENV170990190
MWVZ01255980
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
213
288
+
Val
TAC
[ENA]
¢þ
>WENV170990227
MWWA01000009
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
82130
82207
+
Val
TAC
[ENA]
¢þ
>WENV170990262
MWWA01000162
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
13571
13496
-
Val
TAC
[ENA]
¢þ
>WENV170990338
MWWA01001573
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
4237
4314
+
Val
TAC
[ENA]
¢þ
>WENV170990389
MWWA01003774
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
2216
2293
+
Val
TAC
[ENA]
¢þ
>WENV170990963
MWWA01079240
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
237
162
-
Val
TAC
[ENA]
¢þ
>WENV170991198
MWWA01132718
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
359
436
+
Val
TAC
[ENA]
¢þ
>WENV170992166
MWWB01004177
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
49
126
+
Val
TAC
[ENA]
¢þ
>WENV170992432
MWWB01028700
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
83
6
-
Val
TAC
[ENA]
¢þ
>WENV170992476
MWWB01034081
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
45
122
+
Val
TAC
[ENA]
¢þ
>WENV170992730
MWWB01074449
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
683
760
+
Val
TAC
[ENA]
¢þ
>WENV170992813
MWWB01099574
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
280
357
+
Val
TAC
[ENA]
¢þ
>WENV170993733
MWWB01428420
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
83
6
-
Val
TAC
[ENA]
¢þ
>WENV170994148
MWWD01020463
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
225
302
+
Val
TAC
[ENA]
¢þ
>WENV170994528
MWWE01003435
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
1061
984
-
Val
TAC
[ENA]
¢þ
>WENV170994603
MWWE01014438
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
960
1037
+
Val
TAC
[ENA]
¢þ
>WENV170994643
MWWE01021170
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
457
534
+
Val
TAC
[ENA]
¢þ
>WENV170994767
MWWE01044989
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
453
376
-
Val
TAC
[ENA]
¢þ
>WENV170994876
MWWE01076292
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
287
210
-
Val
TAC
[ENA]
¢þ
>WENV170995328
MWWF01000918
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
4893
4970
+
Val
TAC
[ENA]
¢þ
>WENV170995339
MWWF01001301
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
316
241
-
Val
TAC
[ENA]
¢þ
>WENV170995636
MWWF01030605
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
822
899
+
Val
TAC
[ENA]
¢þ
>WENV170995723
MWWF01043726
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
574
497
-
Val
TAC
[ENA]
¢þ
>WENV170995776
MWWF01056389
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
676
751
+
Val
TAC
[ENA]
¢þ
>WENV170996896
MWWG01003348
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
857
780
-
Val
TAC
[ENA]
¢þ
>WENV170998063
MWWI01006199
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
630
553
-
Val
TAC
[ENA]
¢þ
>WENV170999152
MWWK01000621
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
4951
5028
+
Val
TAC
[ENA]
¢þ
>WENV170999378
MWWK01038696
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
456
379
-
Val
TAC
[ENA]
¢þ
>W1911497282
OCNH01000002
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
897323
897246
-
Val
TAC
[ENA]
¡û
>W1810364392
PVTE01000043
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
4652
4729
+
Val
TAC
[ENA]
¡û
>W1810692103
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
4614561
4614484
-
Val
TAC
[ENA]
¡û
>W1810694453
QLMA01000003
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
288543
288618
+
Val
TAC
[ENA]
¡û
>W1810694454
QLMA01000003
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
288650
288725
+
Val
TAC
[ENA]
¡û
>W1810694541
QLMC01000001
Bacteroidota
Larkinella arboricola DSM 21851 [QLMC]
1293817
1293741
-
Val
TAC
[ENA]
¡û
>W1810745147
QOWE01000019
Bacteroidota
Larkinella punicea zzj9 [QOWE]
96863
96938
+
Val
TAC
[ENA]
¡û
>SRA1014994
SRR023845.416432
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
142
219
+
Val
TAC
[SRA]
>C151016368
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
1266041
1266118
+
Val
TAC
[Ensembl]
¡û
>C151068640
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
797646
797569
-
Val
TAC
[Ensembl]
¡û
>ENV09000609
ABSP01002318
Freshwater sediment metagenome lwMethane_C1
45
122
+
Val
TAC
[ENA]
¡û
>C10111777
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
7825528
7825451
-
Val
TAC
[Ensembl]
¡û
>C161090540
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
3205086
3205163
+
Val
TAC
[Ensembl]
¡û
>W121017755
AGSA01000026
Bacteroidota
Niabella soli DSM 19437 [AGSA]
91433
91356
-
Val
TAC
[ENA]
¡û
>W1610617810
LGYU01000018
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
12180
12103
-
Val
TAC
[ENA]
¡û
>W1610617811
LGYU01000018
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
11152
11075
-
Val
TAC
[ENA]
¡û
>W1610754341
LNFJ01000046
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
13836
13913
+
Val
TAC
[ENA]
¡û
>WENV077755
AAFX01101286
Soil microbial communities from Minnesota Farm
458
381
-
Val
TAC
[ENA]
>W1710544837
FOBB01000013
Bacteroidota
Chitinophaga rupis [FOBB]
140174
140249
+
Val
TAC
[ENA]
¡û
>W1710544838
FOBB01000013
Bacteroidota
Chitinophaga rupis [FOBB]
148868
148943
+
Val
TAC
[ENA]
¡û
>W1710558215
FOLQ01000028
Bacteroidota
Spirosoma endophyticum [FOLQ]
10058
9983
-
Val
TAC
[ENA]
¡û
>W1710583437
FQUU01000001
Bacteroidota
Flavisolibacter ginsengisoli DSM 18119 [FQUU]
256544
256467
-
Val
TAC
[ENA]
¡û
>W1710591005
FRBL01000001
Bacteroidota
Chitinophaga jiangningensis [FRBL]
239716
239641
-
Val
TAC
[ENA]
¡û
>W1710591006
FRBL01000001
Bacteroidota
Chitinophaga jiangningensis [FRBL]
239612
239535
-
Val
TAC
[ENA]
¡û
>W1710591007
FRBL01000001
Bacteroidota
Chitinophaga jiangningensis [FRBL]
239508
239433
-
Val
TAC
[ENA]
¡û
>W1710591008
FRBL01000001
Bacteroidota
Chitinophaga jiangningensis [FRBL]
239371
239296
-
Val
TAC
[ENA]
¡û
>W1710743863
LGYU01000018
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
12180
12103
-
Val
TAC
[ENA]
¡û
>W1710743864
LGYU01000018
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
11152
11075
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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