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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241182 (43 seq.)
>A171000944
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
2351071
2350996
-
Pro
TGG
-
¡û
>A171002033
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
2442946
2442867
-
Pro
TGG
-
¡û
>A171002236
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
261713
261789
+
Pro
TGG
-
¡û
>A171004002
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2132100
2132024
-
Pro
TGG
-
¡û
>A171006559
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
1547964
1547889
-
Pro
TGG
-
¡û
>A171007302
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
224217
224293
+
Pro
TGG
-
¡û
>A171007356
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1603684
1603760
+
Pro
TGG
-
¡û
>A171007387
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
260717
260793
+
Pro
TGG
-
¡û
>A171007648
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
266143
266220
+
Pro
TGG
-
¡û
>WENV180871501
ODLN01081411
[ODLN] human metagenome; G_DNA_Stool
189
114
-
Pro
TGG
[ENA]
¢þ
>WENV181229909
OFEK01000116
[OFEK] activated sludge metagenome; Anaerobic digester
14266
14341
+
Pro
TGG
[ENA]
¢þ
>WENV170021187
BBPF01003774
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2611
2688
+
Pro
TGG
[ENA]
¢þ
>At1590
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
1550685
1550611
-
Pro
TGG
[Ensembl]
¡û
>WENV170645902
JPYU01206008
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
124
50
-
Pro
TGG
[ENA]
¢þ
>WENV170646126
JQGF01103221
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
152
226
+
Pro
TGG
[ENA]
¢þ
>WENV170651575
JRYF01094348
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
896
822
-
Pro
TGG
[ENA]
¢þ
>WENV170668853
LAHQ01067305
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
127
51
-
Pro
TGG
[ENA]
¢þ
>WENV170668916
LAHQ01119733
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
216
290
+
Pro
TGG
[ENA]
¢þ
>WENV170669262
LAHR01073489
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
1
75
+
Pro
TGG
[ENA]
¢þ
>WENV170677301
LDZT01004896
[LDZT] terrestrial metagenome; oil reservoir sample SB1
14613
14537
-
Pro
TGG
[ENA]
¢þ
>W1910230527
FOTL01000002
Euryarchaeota
Methanobrevibacter olleyae DSM 16632 [FOTL]
91366
91291
-
Pro
TGG
[ENA]
¡û
>W1910574917
JQJK01000008
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
598625
598700
+
Pro
TGG
[ENA]
¡û
>W1910574945
JQKN01000001
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
596959
597034
+
Pro
TGG
[ENA]
¡û
>W1910575084
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
105588
105664
+
Pro
TGG
[ENA]
¡û
>W1910576007
JRWK01000002
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
8605
8680
+
Pro
TGG
[ENA]
¡û
>W1910583636
JXMW01000028
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 DH1 [JXMW]
39530
39606
+
Pro
TGG
[ENA]
¡û
>W1910635143
LMVM01000023
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
322804
322879
+
Pro
TGG
[ENA]
¡û
>W1910635169
LMVN01000021
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
26736
26812
+
Pro
TGG
[ENA]
¡û
>W1910646600
LWMS01000001
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
26868
26944
+
Pro
TGG
[ENA]
¡û
>W1910655441
LZPM01000006
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
86320
86395
+
Pro
TGG
[ENA]
¡û
>W1910656134
MAIF01000129
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
723
648
-
Pro
TGG
[ENA]
¡û
>W1910899163
NGJK01000083
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
732
657
-
Pro
TGG
[ENA]
¡û
>W1910938906
NIZT01000060
Euryarchaeota
Candidatus Methanobinarius endosymbioticus NOE [NIZT]
1115
1040
-
Pro
TGG
[ENA]
¡û
>W1610006248
AMGN01000088
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
473
397
-
Pro
TGG
[ENA]
¡û
>W1610011008
AMPO01000003
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
58886
58962
+
Pro
TGG
[ENA]
¡û
>W1610045142
BBBD01000133
Euryarchaeota
Methanobrevibacter arboriphilus JCM 9315 [BBBD]
4830
4906
+
Pro
TGG
[ENA]
¡û
>W1610049137
BBES01000002
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
207439
207515
+
Pro
TGG
[ENA]
¡û
>W1610049174
BBET01000004
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 [BBET]
2944
3020
+
Pro
TGG
[ENA]
¡û
>W1610083224
CBVX010000002
Euryarchaeota
Methanobrevibacter arboriphilus ANOR1 [CBVX]
43678
43754
+
Pro
TGG
[ENA]
¡û
>W1610613855
LGGL01000003
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
14613
14537
-
Pro
TGG
[ENA]
¡û
>W1610990667
LWMT01000066
Euryarchaeota
Methanobrevibacter filiformis DSM 11501 [LWMT]
18372
18298
-
Pro
TGG
[ENA]
¡û
>W1610990746
LWMV01000212
Euryarchaeota
Methanobrevibacter curvatus DSM 11111 [LWMV]
9882
9808
-
Pro
TGG
[ENA]
¡û
>W1610990777
LWMW01000126
Euryarchaeota
Methanobrevibacter cuticularis DSM 11139 [LWMW]
58277
58202
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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