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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241212 (122 seq.)
>W1710871718
LMLL01000012
Gammaproteobacteria
Pseudomonas sp. Leaf58 [LMLL]
29310
29385
+
His
GTG
[ENA]
¡û
>W1710905571
LNNI01000022
Gammaproteobacteria
Pseudomonas putida rhizophila [LNNI]
132283
132208
-
His
GTG
[ENA]
¡û
>W1711076358
LSLE01000001
Gammaproteobacteria
Pseudomonas mosselii [LSLE]
131977
131902
-
His
GTG
[ENA]
¡û
>W1711076360
LSLE01000001
Gammaproteobacteria
Pseudomonas mosselii [LSLE]
131724
131649
-
His
GTG
[ENA]
¡û
>W1711174093
LWDW01000017
Gammaproteobacteria
Pseudomonas putida [LWDW]
66871
66946
+
His
GTG
[ENA]
¡û
>W1711268255
LZCV01000011
Gammaproteobacteria
Pseudomonas mosselii [LZCV]
51972
51897
-
His
GTG
[ENA]
¡û
>W1711268257
LZCV01000011
Gammaproteobacteria
Pseudomonas mosselii [LZCV]
51719
51644
-
His
GTG
[ENA]
¡û
>W1711679838
MRVJ01000006
Gammaproteobacteria
Pseudomonas mosselii [MRVJ]
174231
174306
+
His
GTG
[ENA]
¡û
>W1711679840
MRVJ01000006
Gammaproteobacteria
Pseudomonas mosselii [MRVJ]
174484
174559
+
His
GTG
[ENA]
¡û
>W1711958527
NBWB01000016
Gammaproteobacteria
Pseudomonas putida [NBWB]
25790
25715
-
His
GTG
[ENA]
¡û
>W1712049446
NFSB01000084
Gammaproteobacteria
Pseudomonas putida [NFSB]
146750
146675
-
His
GTG
[ENA]
¡û
>W1712096780
NIBE01000079
Gammaproteobacteria
Pseudomonas sp. DrBHI1 [NIBE]
15664
15739
+
His
GTG
[ENA]
¡û
>W1712096782
NIBE01000079
Gammaproteobacteria
Pseudomonas sp. DrBHI1 [NIBE]
15917
15992
+
His
GTG
[ENA]
¡û
>C171092417
CP019343
Gammaproteobacteria
Oceanicoccus sagamiensis NBRC 107125 [CP019343]
4163575
4163650
+
His
GTG
-
¡û
>C016165
CT573326
Gammaproteobacteria
Pseudomonas entomophila L48 [CT573326]
1952755
1952830
+
His
GTG
[Ensembl]
¡û
>C016167
CT573326
Gammaproteobacteria
Pseudomonas entomophila L48 [CT573326]
1953008
1953083
+
His
GTG
[Ensembl]
¡û
>w021763
AAVY01000022
Gammaproteobacteria
Pseudomonas putida W619 [AAVY]
21090
21013
-
His
GTG
[ENA]
¡û
>w021761
AAVY01000022
Gammaproteobacteria
Pseudomonas putida W619 [AAVY]
21341
21264
-
His
GTG
[ENA]
¡û
>WENV180111437
OAPN01080526
[OAPN] marine metagenome; 2011
21
96
+
His
GTG
[ENA]
¢þ
>WENV180310735
OBJT01018595
[OBJT] soil metagenome; soil
1073
998
-
His
GTG
[ENA]
¢þ
>WENV180362697
OBNX01021239
[OBNX] marine metagenome; ENVO:00002010
505
580
+
His
GTG
[ENA]
¢þ
>WENV180383387
OBOU01059017
[OBOU] marine metagenome; ENV:00002010
296
221
-
His
GTG
[ENA]
¢þ
>WENV180383890
OBOV01061438
[OBOV] marine metagenome; ENV:00002010
201
276
+
His
GTG
[ENA]
¢þ
>W141095983
AVFB02000002
Gammaproteobacteria
Pseudomonas putida S13.1.2 [AVFB]
77221
77296
+
His
GTG
[ENA]
¡û
>W141167994
AXUO01000119
Gammaproteobacteria
Pseudomonas mosselii SJ10 [AXUO]
13890
13815
-
His
GTG
[ENA]
¡û
>W141167996
AXUO01000119
Gammaproteobacteria
Pseudomonas mosselii SJ10 [AXUO]
13636
13561
-
His
GTG
[ENA]
¡û
>W141170836
AXYZ01000008
Gammaproteobacteria
Pseudomonas sp. LAIL14HWK12:I7 [AXYZ]
386471
386396
-
His
GTG
[ENA]
¡û
>W141170838
AXYZ01000008
Gammaproteobacteria
Pseudomonas sp. LAIL14HWK12:I7 [AXYZ]
386222
386147
-
His
GTG
[ENA]
¡û
>W141223817
BAEN01000036
Gammaproteobacteria
Aliiglaciecola lipolytica E3 [BAEN]
70024
70099
+
His
GTG
[ENA]
¡û
>C08007830
CP000949
Gammaproteobacteria
Pseudomonas putida [CP000949]
1936531
1936606
+
His
GTG
[Ensembl]
¡û
>C08007832
CP000949
Gammaproteobacteria
Pseudomonas putida [CP000949]
1936782
1936857
+
His
GTG
[Ensembl]
¡û
>WENV183729574
PJTQ01074403
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
234
159
-
His
GTG
[ENA]
¢þ
>WENV170022453
BCQK01012250
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1260
1185
-
His
GTG
[ENA]
¢þ
>WENV170304605
CESI01061094
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
507
432
-
His
GTG
[ENA]
¢þ
>WENV170401737
CEUE01268415
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
225
150
-
His
GTG
[ENA]
¢þ
>W141426942
JENB01000036
Gammaproteobacteria
Pseudomonas putida W15Oct28 [JENB]
24914
24989
+
His
GTG
[ENA]
¡û
>W141426944
JENB01000036
Gammaproteobacteria
Pseudomonas putida W15Oct28 [JENB]
25171
25246
+
His
GTG
[ENA]
¡û
>WENV170558733
CXWL01087106
[CXWL] groundwater metagenome; biofilm material
874
799
-
His
GTG
[ENA]
¢þ
>WENV170797345
MDSV01178863
[MDSV] marine metagenome; seawater
4572
4497
-
His
GTG
[ENA]
¢þ
>WENV170826952
MDSY01119947
[MDSY] marine metagenome; seawater
6234
6159
-
His
GTG
[ENA]
¢þ
>WENV170861578
MDTB01066476
[MDTB] marine metagenome; seawater
230
305
+
His
GTG
[ENA]
¢þ
>C181078674
CP023299
Gammaproteobacteria
Pseudomonas mosselii BS011 [CP023299]
4830720
4830795
+
His
GTG
-
¡û
>C181078676
CP023299
Gammaproteobacteria
Pseudomonas mosselii BS011 [CP023299]
4830973
4831048
+
His
GTG
-
¡û
>C181094137
CP024085
Gammaproteobacteria
Pseudomonas putida E41 [CP024085]
1983874
1983949
+
His
GTG
-
¡û
>C181094139
CP024085
Gammaproteobacteria
Pseudomonas putida E41 [CP024085]
1984123
1984198
+
His
GTG
-
¡û
>C181094232
CP024086
Gammaproteobacteria
Pseudomonas putida E46 [CP024086]
4075021
4074946
-
His
GTG
-
¡û
>C181094234
CP024086
Gammaproteobacteria
Pseudomonas putida E46 [CP024086]
4074772
4074697
-
His
GTG
-
¡û
>C181096357
CP024159
Gammaproteobacteria
Pseudomonas mosselii PtA1 [CP024159]
3648097
3648022
-
His
GTG
-
¡û
>C181096359
CP024159
Gammaproteobacteria
Pseudomonas mosselii PtA1 [CP024159]
3647844
3647769
-
His
GTG
-
¡û
>C181133218
CP026386
Gammaproteobacteria
Pseudomonas sp. PONIH3 [CP026386]
5827318
5827393
+
His
GTG
-
¡û
>C181133220
CP026386
Gammaproteobacteria
Pseudomonas sp. PONIH3 [CP026386]
5827572
5827647
+
His
GTG
-
¡û
>C191079227
CP031729
Gammaproteobacteria
Stenotrophomonas rhizophila GA1 [CP031729]
3864027
3863952
-
His
GTG
-
¡û
>C191093424
CP032677
Gammaproteobacteria
Pseudomonas sp. Leaf58 [CP032677]
1923549
1923624
+
His
GTG
-
¡û
>C191123315
CP034337
Gammaproteobacteria
Pseudomonas oryziphila 2014 [CP034337]
2016887
2016962
+
His
GTG
-
¡û
>C191123317
CP034337
Gammaproteobacteria
Pseudomonas oryziphila 2014 [CP034337]
2017141
2017216
+
His
GTG
-
¡û
>C191123389
CP034338
Gammaproteobacteria
Pseudomonas oryziphila 1257 [CP034338]
2086279
2086354
+
His
GTG
-
¡û
>C191123391
CP034338
Gammaproteobacteria
Pseudomonas oryziphila 1257 [CP034338]
2086533
2086608
+
His
GTG
-
¡û
>W141561969
JHYW01000002
Gammaproteobacteria
Pseudomonas mosselii DSM 17497 [JHYW]
404440
404365
-
His
GTG
[ENA]
¡û
>W141561971
JHYW01000002
Gammaproteobacteria
Pseudomonas mosselii DSM 17497 [JHYW]
363221
363146
-
His
GTG
[ENA]
¡û
>W1910270397
FQLF01000007
Gammaproteobacteria
Oceanicoccus sp. KOV_DT_Chl [FQLF]
228855
228930
+
His
GTG
[ENA]
¡û
>W1910471536
FWZY01000006
Gammaproteobacteria
Pseudomonas sp. LAIL14HWK12:I11 [FWZY]
43225
43300
+
His
GTG
[ENA]
¡û
>W1910471538
FWZY01000006
Gammaproteobacteria
Pseudomonas sp. LAIL14HWK12:I11 [FWZY]
43474
43549
+
His
GTG
[ENA]
¡û
>W1910747785
MIND01000018
Gammaproteobacteria
Pseudomonas putida KT-27 [MIND]
4164351
4164276
-
His
GTG
[ENA]
¡û
>W1910747787
MIND01000018
Gammaproteobacteria
Pseudomonas putida KT-27 [MIND]
4164100
4164025
-
His
GTG
[ENA]
¡û
>W1911496374
OCMN01000006
Gammaproteobacteria
Pseudomonas sp. LAIL14HWK12:I8 [OCMN]
389148
389073
-
His
GTG
[ENA]
¡û
>W1911496376
OCMN01000006
Gammaproteobacteria
Pseudomonas sp. LAIL14HWK12:I8 [OCMN]
388899
388824
-
His
GTG
[ENA]
¡û
>W1911765848
QXDD01000001
Gammaproteobacteria
Pseudomonas putida ZKA37 [QXDD]
4616200
4616275
+
His
GTG
[ENA]
¡û
>W1911765850
QXDD01000001
Gammaproteobacteria
Pseudomonas putida ZKA37 [QXDD]
4616451
4616526
+
His
GTG
[ENA]
¡û
>W1810079946
PEMX01000021
Gammaproteobacteria
Pseudomonas sp. 382 [PEMX]
38476
38551
+
His
GTG
[ENA]
¡û
>W1810211262
POHX01000010
Gammaproteobacteria
Pseudomonas sp. DP16D-E2 [POHX]
20270
20345
+
His
GTG
[ENA]
¡û
>W1810211264
POHX01000010
Gammaproteobacteria
Pseudomonas sp. DP16D-E2 [POHX]
20524
20599
+
His
GTG
[ENA]
¡û
>W1810211266
POHX01000010
Gammaproteobacteria
Pseudomonas sp. DP16D-E2 [POHX]
20778
20853
+
His
GTG
[ENA]
¡û
>W1810211332
POHY01000019
Gammaproteobacteria
Pseudomonas sp. FW305-42 [POHY]
20259
20334
+
His
GTG
[ENA]
¡û
>W1810211334
POHY01000019
Gammaproteobacteria
Pseudomonas sp. FW305-42 [POHY]
20513
20588
+
His
GTG
[ENA]
¡û
>W1810211405
POHZ01000025
Gammaproteobacteria
Pseudomonas sp. MPR-R1B [POHZ]
20271
20346
+
His
GTG
[ENA]
¡û
>W1810211407
POHZ01000025
Gammaproteobacteria
Pseudomonas sp. MPR-R1B [POHZ]
20525
20600
+
His
GTG
[ENA]
¡û
>W1810211458
POIA01000021
Gammaproteobacteria
Pseudomonas sp. GW531-E2 [POIA]
20270
20345
+
His
GTG
[ENA]
¡û
>W1810211460
POIA01000021
Gammaproteobacteria
Pseudomonas sp. GW531-E2 [POIA]
20524
20599
+
His
GTG
[ENA]
¡û
>W1810211522
POIB01000014
Gammaproteobacteria
Pseudomonas sp. FW305-127 [POIB]
107333
107258
-
His
GTG
[ENA]
¡û
>W1810211524
POIB01000014
Gammaproteobacteria
Pseudomonas sp. FW305-127 [POIB]
107079
107004
-
His
GTG
[ENA]
¡û
>W1810211574
POIC01000009
Gammaproteobacteria
Pseudomonas sp. FW305-17 [POIC]
134360
134285
-
His
GTG
[ENA]
¡û
>W1810211576
POIC01000009
Gammaproteobacteria
Pseudomonas sp. FW305-17 [POIC]
134106
134031
-
His
GTG
[ENA]
¡û
>W1810580730
QETK01000002
Gammaproteobacteria
Pseudomonas sp. SDI [QETK]
112102
112027
-
His
GTG
[ENA]
¡û
>W1810580732
QETK01000002
Gammaproteobacteria
Pseudomonas sp. SDI [QETK]
111835
111760
-
His
GTG
[ENA]
¡û
>W1810670106
QJRO01000008
Gammaproteobacteria
Pseudomonas soli LBp-160603 [QJRO]
196415
196340
-
His
GTG
[ENA]
¡û
>W1810670108
QJRO01000008
Gammaproteobacteria
Pseudomonas soli LBp-160603 [QJRO]
196161
196086
-
His
GTG
[ENA]
¡û
>W1810670164
QJRP01000013
Gammaproteobacteria
Pseudomonas mosselii LB-090624 [QJRP]
112634
112559
-
His
GTG
[ENA]
¡û
>W1810670166
QJRP01000013
Gammaproteobacteria
Pseudomonas mosselii LB-090624 [QJRP]
112381
112306
-
His
GTG
[ENA]
¡û
>W1810670215
QJRQ01000004
Gammaproteobacteria
Pseudomonas soli 57B-090714 [QJRQ]
328989
328914
-
His
GTG
[ENA]
¡û
>W1810670217
QJRQ01000004
Gammaproteobacteria
Pseudomonas soli 57B-090714 [QJRQ]
328735
328660
-
His
GTG
[ENA]
¡û
>W1810682900
QKVM01000026
Gammaproteobacteria
Pseudomonas sichuanensis WCHPs060039 [QKVM]
34817
34742
-
His
GTG
[ENA]
¡û
>W1810682902
QKVM01000026
Gammaproteobacteria
Pseudomonas sichuanensis WCHPs060039 [QKVM]
34563
34488
-
His
GTG
[ENA]
¡û
>W1810685253
QKZD01000011
Gammaproteobacteria
Pseudomonas sp. 2848 [QKZD]
36206
36281
+
His
GTG
[ENA]
¡û
>W1810685255
QKZD01000011
Gammaproteobacteria
Pseudomonas sp. 2848 [QKZD]
36460
36535
+
His
GTG
[ENA]
¡û
>W1810693295
QLLF01000015
Gammaproteobacteria
Pseudomonas putida HAMBI_6 [QLLF]
72191
72116
-
His
GTG
[ENA]
¡û
>C151050022
CP009365
Gammaproteobacteria
Pseudomonas soli SJ10 [CP009365]
2929326
2929251
-
His
GTG
[Ensembl]
¡û
>C151050024
CP009365
Gammaproteobacteria
Pseudomonas soli SJ10 [CP009365]
2929072
2928997
-
His
GTG
[Ensembl]
¡û
>C151074968
CP010979
Gammaproteobacteria
Pseudomonas putida S13.1.2 [CP010979]
2925412
2925337
-
His
GTG
[Ensembl]
¡û
>C151104856
LN847264
Gammaproteobacteria
Pseudomonas sp. CCOS 191 [LN847264]
1990472
1990547
+
His
GTG
[Ensembl]
¡û
>C151104858
LN847264
Gammaproteobacteria
Pseudomonas sp. CCOS 191 [LN847264]
1990726
1990801
+
His
GTG
[Ensembl]
¡û
>W1510014983
BBQL01000044
Gammaproteobacteria
Pseudomonas putida KF703 [BBQL]
123125
123050
-
His
GTG
[ENA]
¡û
>W1511013713
JHEE01000071
Gammaproteobacteria
Pseudomonas sp. 250J [JHEE]
58383
58458
+
His
GTG
[ENA]
¡û
>W1511013715
JHEE01000071
Gammaproteobacteria
Pseudomonas sp. 250J [JHEE]
58636
58711
+
His
GTG
[ENA]
¡û
>W1511443285
JUST01000447
Gammaproteobacteria
Pseudomonas putida 791_PPUT [JUST]
14162
14087
-
His
GTG
[ENA]
¡û
>W1511594855
LBME01000015
Gammaproteobacteria
Pseudomonas putida ATH-43 [LBME]
107192
107267
+
His
GTG
[ENA]
¡û
>W1511594857
LBME01000015
Gammaproteobacteria
Pseudomonas putida ATH-43 [LBME]
107443
107518
+
His
GTG
[ENA]
¡û
>W1511594858
LBME01000015
Gammaproteobacteria
Pseudomonas putida ATH-43 [LBME]
107546
107621
+
His
GTG
[ENA]
¡û
>C161071588
CP014343
Gammaproteobacteria
Pseudomonas putida 1A00316 [CP014343]
3669505
3669430
-
His
GTG
[Ensembl]
¡û
>C161071590
CP014343
Gammaproteobacteria
Pseudomonas putida 1A00316 [CP014343]
3669252
3669177
-
His
GTG
[Ensembl]
¡û
>W121113979
ALPA01000029
Gammaproteobacteria
Pseudomonas sp. S13.1.2 [ALPA]
37794
37719
-
His
GTG
[ENA]
¡û
>W1610047141
BBDB01000095
Gammaproteobacteria
Pseudomonas putida JCM 18452 [BBDB]
5364
5439
+
His
GTG
[ENA]
¡û
>W1610059725
BCBG01000003
Gammaproteobacteria
Pseudomonas sp. NBRC 111130 [BCBG]
140602
140677
+
His
GTG
[ENA]
¡û
>C131000966
AP013070
Gammaproteobacteria
Pseudomonas putida NBRC 14164 [AP013070]
4006741
4006666
-
His
GTG
[Ensembl]
¡û
>W1610734064
LMLL01000012
Gammaproteobacteria
Pseudomonas sp. Leaf58 [LMLL]
29310
29385
+
His
GTG
[ENA]
¡û
>W1610764585
LNNI01000022
Gammaproteobacteria
Pseudomonas putida rhizophila [LNNI]
132283
132208
-
His
GTG
[ENA]
¡û
>W1610915663
LSLE01000001
Gammaproteobacteria
Pseudomonas mosselii [LSLE]
131977
131902
-
His
GTG
[ENA]
¡û
>W1610915665
LSLE01000001
Gammaproteobacteria
Pseudomonas mosselii [LSLE]
131724
131649
-
His
GTG
[ENA]
¡û
>W1610982557
LWDW01000017
Gammaproteobacteria
Pseudomonas putida [LWDW]
66871
66946
+
His
GTG
[ENA]
¡û
>W1710043746
BBDB01000095
Gammaproteobacteria
Pseudomonas putida JCM 18452 [BBDB]
5364
5439
+
His
GTG
[ENA]
¡û
>W1710056848
BCBG01000003
Gammaproteobacteria
Pseudomonas sp. NBRC 111130 [BCBG]
140602
140677
+
His
GTG
[ENA]
¡û
>W1710549605
FOEQ01000005
Gammaproteobacteria
Pseudomonas soli [FOEQ]
31793
31868
+
His
GTG
[ENA]
¡û
>W1710549607
FOEQ01000005
Gammaproteobacteria
Pseudomonas soli [FOEQ]
32047
32122
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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