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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241526 (5 seq.)
>WENV180293267
OBIX01018497
[OBIX] human gut metagenome; human gut
520
444
-
His
GTG
[ENA]
¡û
>WENV181197264
OERA01006774
[OERA] metagenome; Caecal content
936
860
-
His
GTG
[ENA]
¡û
>WENV181202158
OERQ01023476
[OERQ] metagenome; Caecal content
496
420
-
His
GTG
[ENA]
¡û
>WENV170637213
JFBN01314245
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1015
939
-
His
GTG
[ENA]
¡û
>W2110222146
JACJJP010000007
Bacillota
Gemmiger formicilis An812 [JACJJP]
16690
16766
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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