This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241531 (28 seq.)
>W1711584434
MNYM01000005
Bacteroidota
Flavobacteriaceae bacterium CG2_30_31_66 [MNYM]
57935
58010
+
Phe
GAA
[ENA]
¡û
>WENV181843660
OGVU01041281
[OGVU] freshwater metagenome; freshwater
603
529
-
Phe
GAA
[ENA]
¢þ
>WENV170646209
JQGG01031383
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
240
315
+
Phe
GAA
[ENA]
¢þ
>C181000145
AP014609
Bacteroidota
Blattabacterium cuenoti BPAY [AP014609]
558475
558548
+
Phe
GAA
-
¡û
>C181185566
CP029808
Bacteroidota
Blattabacterium punctulatus CPUml [CP029808]
84337
84263
-
Phe
GAA
-
¡û
>C181185597
CP029810
Bacteroidota
Blattabacterium punctulatus CPUsm [CP029810]
84271
84197
-
Phe
GAA
-
¡û
>C181185628
CP029811
Bacteroidota
Blattabacterium punctulatus CPUpc [CP029811]
84217
84143
-
Phe
GAA
-
¡û
>C181185659
CP029812
Bacteroidota
Blattabacterium punctulatus CPUsv [CP029812]
84101
84027
-
Phe
GAA
-
¡û
>C181185690
CP029813
Bacteroidota
Blattabacterium punctulatus CPUbt [CP029813]
84107
84033
-
Phe
GAA
-
¡û
>C181185721
CP029814
Bacteroidota
Blattabacterium punctulatus CPUmp [CP029814]
84124
84050
-
Phe
GAA
-
¡û
>C181185752
CP029815
Bacteroidota
Blattabacterium punctulatus CPUmc [CP029815]
84171
84097
-
Phe
GAA
-
¡û
>C181185783
CP029816
Bacteroidota
Blattabacterium punctulatus CPUbr [CP029816]
84872
84798
-
Phe
GAA
-
¡û
>C181185814
CP029818
Bacteroidota
Blattabacterium punctulatus CPUwf [CP029818]
84782
84708
-
Phe
GAA
-
¡û
>C181185845
CP029820
Bacteroidota
Blattabacterium sp. [Cryptocercus kyebangensis] CKYod [CP029820]
87020
86946
-
Phe
GAA
-
¡û
>C181186046
CP029844
Bacteroidota
Blattabacterium clevelandi CCLhc [CP029844]
86544
86470
-
Phe
GAA
-
¡û
>C191000057
AP014608
Bacteroidota
Blattabacterium cuenoti STAT [AP014608]
558445
558518
+
Phe
GAA
-
¡û
>C191000089
AP014610
Bacteroidota
Blattabacterium punctulatus CPU2 [AP014610]
545719
545793
+
Phe
GAA
-
¡û
>C141003948
CP005488
Bacteroidota
Blattabacterium sp. [Nauphoeta cinerea] [CP005488]
91469
91395
-
Phe
GAA
[Ensembl]
¡û
>W1910796583
MSCL01000001
Bacteroidota
Polaribacter gangjinensis KCTC 22729 [MSCL]
2854275
2854202
-
Phe
GAA
[ENA]
¡û
>C10101597
CP001429
Bacteroidota
Blattabacterium sp. [Periplaneta americana] str. BPLAN [CP001429]
563865
563939
+
Phe
GAA
[Ensembl]
¡û
>C10101649
CP001487
Bacteroidota
Blattabacterium sp. [Blattella germanica] str. Bge Alboraia [CP001487]
91067
90994
-
Phe
GAA
[Ensembl]
¡û
>C121004007
CP003000
Bacteroidota
Blattabacterium sp. [Mastotermes darwiniensis] str. MADAR [CP003000]
521747
521822
+
Phe
GAA
[Ensembl]
¡û
>C121004057
CP003015
Bacteroidota
Blattabacterium sp. [Cryptocercus punctulatus] str. Cpu [CP003015]
84970
84896
-
Phe
GAA
[Ensembl]
¡û
>C121014241
CP003535
Bacteroidota
Blattabacterium sp. [Blaberus giganteus] BGIGA [CP003535]
554931
555005
+
Phe
GAA
[Ensembl]
¡û
>C131004627
CP003605
Bacteroidota
Blattabacterium sp. [Blatta orientalis] str. Tarazona [CP003605]
93734
93660
-
Phe
GAA
[Ensembl]
¡û
>C131000705
AP012548
Bacteroidota
Blattabacterium cuenoti BPAA [AP012548]
558599
558672
+
Phe
GAA
[Ensembl]
¡û
>W1610627150
LIDG01000497
Bacteroidota
Cryomorphaceae bacterium BACL22 MAG-120619-bin32 [LIDG]
138
63
-
Phe
GAA
[ENA]
¡û
>W1710758277
LIDG01000497
Bacteroidota
Cryomorphaceae bacterium BACL22 MAG-120619-bin32 [LIDG]
138
63
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK