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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241566 (65 seq.)
>W1711320418
MBAF01000002
Bacillota
Clostridium beijerinckii [MBAF]
67583
67658
+
Val
TAC
[ENA]
¡û
>W1711320421
MBAF01000002
Bacillota
Clostridium beijerinckii [MBAF]
67867
67942
+
Val
TAC
[ENA]
¡û
>W1711320452
MBAF01000030
Bacillota
Clostridium beijerinckii [MBAF]
15368
15293
-
Val
TAC
[ENA]
¡û
>W1711320460
MBAF01000030
Bacillota
Clostridium beijerinckii [MBAF]
14641
14566
-
Val
TAC
[ENA]
¡û
>W1711320463
MBAF01000030
Bacillota
Clostridium beijerinckii [MBAF]
14277
14202
-
Val
TAC
[ENA]
¡û
>W131092137
AOIF01000145
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
101721
101646
-
Val
TAC
[ENA]
¡û
>W131092179
AOIF01000160
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
39075
39150
+
Val
TAC
[ENA]
¡û
>W131092183
AOIF01000160
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
39436
39511
+
Val
TAC
[ENA]
¡û
>C171046010
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
547392
547467
+
Val
TAC
-
¡û
>C171046013
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
547719
547794
+
Val
TAC
-
¡û
>C171046031
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
5079352
5079277
-
Val
TAC
-
¡û
>C171046035
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
5078992
5078917
-
Val
TAC
-
¡û
>WENV180096130
MTBK01111558
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
845
920
+
Val
TAC
[ENA]
¢þ
>WENV180098519
MTBK01251044
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
641
566
-
Val
TAC
[ENA]
¢þ
>WENV181226181
OFDK01000184
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
2491
2416
-
Val
TAC
[ENA]
¢þ
>WENV181810998
OGSX01000609
[OGSX] human gut metagenome; fecal sample 1 from infant 8
145
70
-
Val
TAC
[ENA]
¢þ
>C08000776
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2125455
2125383
-
Val
TAC
[Ensembl]
¡û
>C08006978
CP001034
Bacillota
Natranaerobius thermophilus JW/NM-WN-LF [CP001034]
1289879
1289954
+
Val
TAC
[Ensembl]
¡û
>C08006979
CP001034
Bacillota
Natranaerobius thermophilus JW/NM-WN-LF [CP001034]
1300636
1300711
+
Val
TAC
[Ensembl]
¡û
>C08006980
CP001034
Bacillota
Natranaerobius thermophilus JW/NM-WN-LF [CP001034]
1315419
1315494
+
Val
TAC
[Ensembl]
¡û
>WENV182952940
OKVX01000710
[OKVX] human gut metagenome; human gut
270
195
-
Val
TAC
[ENA]
¢þ
>WENV170016638
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
63269
63344
+
Val
TAC
[ENA]
¢þ
>WENV170016641
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
63538
63613
+
Val
TAC
[ENA]
¢þ
>WENV170562464
CZCB01002978
[CZCB] anaerobic digester metagenome; anaerobic digester
10625
10550
-
Val
TAC
[ENA]
¢þ
>WENV170562609
CZCB01003892
[CZCB] anaerobic digester metagenome; anaerobic digester
3105
3030
-
Val
TAC
[ENA]
¢þ
>WENV170674822
LCWY01007256
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
229
304
+
Val
TAC
[ENA]
¢þ
>WENV170687901
LFRM01216445
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
324
249
-
Val
TAC
[ENA]
¢þ
>WENV170688970
LFRM01270312
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
52980
52905
-
Val
TAC
[ENA]
¢þ
>WENV170689261
LFRM01286001
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
131
56
-
Val
TAC
[ENA]
¢þ
>WENV170727035
LSQX01402292
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5124
5199
+
Ile
TAT
[ENA]
¢þ
>W09107633
ABKR01000001
Bacillota
Natranaerobius thermophilus JW/NM-WN-LF [ABKR]
170081
170006
-
Val
TAC
[ENA]
¡û
>W09107634
ABKR01000001
Bacillota
Natranaerobius thermophilus JW/NM-WN-LF [ABKR]
159324
159249
-
Val
TAC
[ENA]
¡û
>W09107635
ABKR01000001
Bacillota
Natranaerobius thermophilus JW/NM-WN-LF [ABKR]
144541
144466
-
Val
TAC
[ENA]
¡û
>WENV170967165
MTKW01000441
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
14622
14697
+
Val
TAC
[ENA]
¢þ
>WENV170968695
MTKW01013185
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1013
938
-
Val
TAC
[ENA]
¢þ
>WENV170968705
MTKW01013186
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
800
725
-
Val
TAC
[ENA]
¢þ
>WENV170969352
MTKW01026456
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
419
344
-
Val
TAC
[ENA]
¢þ
>WENV170970180
MTKW01055879
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1093
1168
+
Val
TAC
[ENA]
¢þ
>W1910927852
NIQC01000015
Bacillota
Natranaerobius trueperi DSM 18760 [NIQC]
11152
11227
+
Val
TAC
[ENA]
¡û
>W1910927853
NIQC01000015
Bacillota
Natranaerobius trueperi DSM 18760 [NIQC]
11263
11338
+
Val
TAC
[ENA]
¡û
>W1910927854
NIQC01000015
Bacillota
Natranaerobius trueperi DSM 18760 [NIQC]
11373
11448
+
Val
TAC
[ENA]
¡û
>W1910927866
NIQC01000028
Bacillota
Natranaerobius trueperi DSM 18760 [NIQC]
29895
29970
+
Val
TAC
[ENA]
¡û
>W1911695212
QMBG01000018
Bacillota
Clostridium tetani 1240 [QMBG]
13265
13190
-
Val
TAC
[ENA]
¡û
>W1911695413
QMBK01000007
Bacillota
Clostridium tetani Strain 3 [QMBK]
13298
13223
-
Val
TAC
[ENA]
¡û
>W1911695489
QMBL01000011
Bacillota
Clostridium tetani Harvard [QMBL]
39076
39151
+
Val
TAC
[ENA]
¡û
>W1511345225
JRGH01000003
Bacillota
Clostridium tetani ATCC 9441 [JRGH]
91321
91246
-
Val
TAC
[ENA]
¡û
>W1511345228
JRGH01000003
Bacillota
Clostridium tetani ATCC 9441 [JRGH]
91044
90969
-
Val
TAC
[ENA]
¡û
>W1511345283
JRGI01000007
Bacillota
Clostridium tetani ATCC 453 [JRGI]
38929
39004
+
Val
TAC
[ENA]
¡û
>W1511345286
JRGI01000007
Bacillota
Clostridium tetani ATCC 453 [JRGI]
39206
39281
+
Val
TAC
[ENA]
¡û
>C161023468
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
486922
486997
+
Val
TAC
[Ensembl]
¡û
>C161023471
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
487206
487281
+
Val
TAC
[Ensembl]
¡û
>C161023489
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
6438867
6438792
-
Val
TAC
[Ensembl]
¡û
>C161023493
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
6438503
6438428
-
Val
TAC
[Ensembl]
¡û
>C161023497
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
6438141
6438066
-
Val
TAC
[Ensembl]
¡û
>W1610605850
LFSI01000057
Bacillota
Clostridia bacterium DTU065 [LFSI]
52980
52905
-
Val
TAC
[ENA]
¡û
>W1611062441
MBAF01000002
Bacillota
Clostridium beijerinckii [MBAF]
67583
67658
+
Val
TAC
[ENA]
¡û
>W1611062444
MBAF01000002
Bacillota
Clostridium beijerinckii [MBAF]
67867
67942
+
Val
TAC
[ENA]
¡û
>W1611062475
MBAF01000030
Bacillota
Clostridium beijerinckii [MBAF]
15368
15293
-
Val
TAC
[ENA]
¡û
>W1611062483
MBAF01000030
Bacillota
Clostridium beijerinckii [MBAF]
14641
14566
-
Val
TAC
[ENA]
¡û
>W1611062486
MBAF01000030
Bacillota
Clostridium beijerinckii [MBAF]
14277
14202
-
Val
TAC
[ENA]
¡û
>W1710578911
FPBY01000079
Bacillota
Clostridium sp. DSM 8431 [FPBY]
15655
15730
+
Val
TAC
[ENA]
¡û
>W1710578921
FPBY01000161
Bacillota
Clostridium sp. DSM 8431 [FPBY]
388
313
-
Val
TAC
[ENA]
¡û
>W1710578924
FPBY01000161
Bacillota
Clostridium sp. DSM 8431 [FPBY]
112
37
-
Val
TAC
[ENA]
¡û
>W1710600763
FUWT01000018
Bacillota
Clostridium tetani [FUWT]
39253
39328
+
Val
TAC
[ENA]
¡û
>W1710727137
LFSI01000057
Bacillota
Clostridia bacterium DTU065 [LFSI]
52980
52905
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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