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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241569 (21 seq.)
>A171001088
CP001857
Euryarchaeota
Archaeoglobus profundus DSM 5631 [CP001857]
1445734
1445660
-
Glu
CTC
-
¡û
>A171001236
CP001899
Euryarchaeota
Ferroglobus placidus DSM 10642 [CP001899]
1330327
1330253
-
Glu
CTC
-
¡û
>A171002118
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
1093847
1093771
-
Glu
CTC
-
¡û
>A171003835
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
1208153
1208078
-
Glu
CTC
-
¡û
>A171005682
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
1214588
1214513
-
Glu
CTC
-
¡û
>A171006137
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
889530
889454
-
Glu
CTC
-
¡û
>WENV180275434
OBHT01030493
[OBHT] metagenome; hydrothermal vent
157
82
-
Glu
CTC
[ENA]
¢þ
>WENV180287208
OBIK01001957
[OBIK] hydrothermal vent metagenome; sea water
1460
1535
+
Glu
CTC
[ENA]
¢þ
>WENV181212913
OFBU01001141
[OFBU] metagenome; hydrothermal vent
1928
1853
-
Glu
CTC
[ENA]
¢þ
>WENV181214691
OFBY01007767
[OFBY] metagenome; hydrothermal vent
183
258
+
Glu
CTC
[ENA]
¢þ
>WENV181215125
OFBZ01004316
[OFBZ] metagenome; hydrothermal vent
1293
1218
-
Glu
CTC
[ENA]
¢þ
>WENV181216637
OFCC01012692
[OFCC] metagenome; hydrothermal vent
237
312
+
Glu
CTC
[ENA]
¢þ
>At0637
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
1155813
1155739
-
Glu
CTC
[Ensembl]
¡û
>WENV170675818
LDZQ01000609
[LDZQ] terrestrial metagenome; oil reservoir sample I2
13797
13872
+
Glu
CTC
[ENA]
¢þ
>WENV170676400
LDZR01002406
[LDZR] terrestrial metagenome; oil reservoir sample K2
827
752
-
Glu
CTC
[ENA]
¢þ
>WENV170779125
LZCG01001252
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
377
302
-
Glu
CTC
[ENA]
¢þ
>WENV170779215
LZQN01000017
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
17541
17466
-
Glu
CTC
[ENA]
¢þ
>W1910200366
FJNF01000140
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
31342
31267
-
Glu
CTC
[ENA]
¡û
>W1610001594
ACYZ01000006
Euryarchaeota
Ferroglobus placidus DSM 10642 [ACYZ]
25867
25793
-
Glu
CTC
[ENA]
¡û
>W1610612345
LGEQ01000036
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
13797
13872
+
Glu
CTC
[ENA]
¡û
>W1610612618
LGEX01000048
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
827
752
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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