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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241600 (44 seq.)
>W1710875570
LMOM01000065
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
322244
322319
+
Lys
CTT
[ENA]
¡û
>WENV010865
AACY020294691
Marine microbial communities from Global Ocean Sampling (GOS)
1336
1261
-
Lys
CTT
[ENA]
>W131104599
APCS01000129
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
4183
4108
-
Lys
CTT
[ENA]
¡û
>W131178650
ARLS01000045
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
19686
19761
+
Lys
CTT
[ENA]
¡û
>W131213909
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
821005
820930
-
Lys
CTT
[ENA]
¡û
>W131237110
AUMV01000011
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
26258
26183
-
Lys
CTT
[ENA]
¡û
>C007719
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
78888
78963
+
Lys
CTT
[Ensembl]
¡û
>C007930
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
41882
41957
+
Lys
CTT
[Ensembl]
¡û
>WENV180232264
OBCO01000248
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
42836
42761
-
Lys
CTT
[ENA]
¢þ
>WENV180233243
OBCP01000233
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
42836
42761
-
Lys
CTT
[ENA]
¢þ
>WENV180569627
OCLR01000242
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
42836
42761
-
Lys
CTT
[ENA]
¢þ
>WENV180570689
OCLS01000416
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
30368
30443
+
Lys
CTT
[ENA]
¢þ
>WENV180571611
OCLT01000235
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
42836
42761
-
Lys
CTT
[ENA]
¢þ
>WENV180573857
OCLW01000233
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
42836
42761
-
Lys
CTT
[ENA]
¢þ
>WENV180640034
OCRL01000348
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
9193
9118
-
Lys
CTT
[ENA]
¢þ
>WENV180640872
OCRM01000243
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
42836
42761
-
Lys
CTT
[ENA]
¢þ
>W141154785
AXLL01000125
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
5432
5507
+
Lys
CTT
[ENA]
¡û
>W141169909
AXWT01000014
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
62650
62725
+
Lys
CTT
[ENA]
¡û
>W141220807
AZYF01000239
Deinococcota
Deinococcus pimensis DSM 21231 [AZYF]
8653
8728
+
Lys
CTT
[ENA]
¡û
>C181134279
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
87095
87170
+
Lys
CTT
-
¡û
>C181185118
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
429107
429032
-
Lys
CTT
-
¡û
>C181196464
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
2259775
2259850
+
Lys
CTT
-
¡û
>C191018433
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
330144
330219
+
Lys
CTT
-
¡û
>W141525673
JHAC01000008
Deinococcota
Deinococcus phoenicis [JHAC]
83926
84001
+
Lys
CTT
[ENA]
¡û
>W141561482
JHYL01000015
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
43028
42953
-
Lys
CTT
[ENA]
¡û
>W09102011
AAHE01000006
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
141501
141576
+
Lys
CTT
[ENA]
¡û
>W141702081
JMLF01000020
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
43065
42990
-
Lys
CTT
[ENA]
¡û
>W141711939
JMQF01000028
Deinococcota
Deinococcus sp. RL [JMQF]
15226
15151
-
Lys
CTT
[ENA]
¡û
>W141821113
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
1768122
1768197
+
Lys
CTT
[ENA]
¡û
>W1911597470
PNOR01000006
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
124253
124328
+
Lys
CTT
[ENA]
¡û
>W1911802514
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
2088016
2087941
-
Lys
CTT
[ENA]
¡û
>W1810003555
BFAG01000013
Deinococcota
Deinococcus aerius TR0125 [BFAG]
20398
20473
+
Lys
CTT
[ENA]
¡û
>W1810423335
PYSV01000008
Deinococcota
Deinococcus arcticus OD32 [PYSV]
44182
44107
-
Lys
CTT
[ENA]
¡û
>W1810671603
QJSX01000008
Deinococcota
Deinococcus yavapaiensis KR-236 DSM 18048 [QJSX]
157675
157750
+
Lys
CTT
[ENA]
¡û
>C10105332
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
41882
41957
+
Lys
CTT
[Ensembl]
¡û
>C11107256
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
122003
121928
-
Lys
CTT
[Ensembl]
¡û
>C11107259
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
41882
41957
+
Lys
CTT
[Ensembl]
¡û
>C121002097
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
245381
245306
-
Lys
CTT
[Ensembl]
¡û
>C161061623
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
432986
432911
-
Lys
CTT
[Ensembl]
¡û
>C161082996
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
35907
35832
-
Lys
CTT
-
¡û
>C131003573
CP003382
Deinococcota
Deinococcus peraridilitoris DSM 19664 [CP003382]
2087817
2087892
+
Lys
CTT
[Ensembl]
¡û
>W1610737916
LMOM01000065
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
322244
322319
+
Lys
CTT
[ENA]
¡û
>W1710542283
FNZA01000017
Deinococcota
Deinococcus reticulitermitis [FNZA]
27210
27135
-
Lys
CTT
[ENA]
¡û
>W1710605305
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
96795
96870
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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