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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241612 (16 seq.)
>W1711438268
MIQH01000001
Gammaproteobacteria
Bathymodiolus thermophilus thioautotrophic gill symbiont [MIQH]
49006
48930
-
Pro
GGG
[ENA]
¡û
>WENV181307054
OFIO01011669
[OFIO] marine metagenome; seawater
133
57
-
Pro
GGG
[ENA]
¡û
>WENV170173667
CEOQ01233306
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
922
846
-
Pro
GGG
[ENA]
¡û
>WENV170481343
CEVL01180183
[CEVL] marine metagenome genome assembly TARA_146_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4582
4506
-
Pro
GGG
[ENA]
¡û
>WENV170646619
JQIA01000468
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
5250
5326
+
Pro
GGG
[ENA]
¡û
>WENV170765165
LWDU01035242
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
6057
5981
-
Pro
GGG
[ENA]
¡û
>WENV170814346
MDSW01215192
[MDSW] marine metagenome; seawater
49385
49309
-
Pro
GGG
[ENA]
¡û
>WENV170829816
MDSZ01015322
[MDSZ] marine metagenome; seawater
83
7
-
Pro
GGG
[ENA]
¡û
>WENV170832539
MDSZ01064389
[MDSZ] marine metagenome; seawater
2068
2144
+
Pro
GGG
[ENA]
¡û
>WENV170858715
MDTB01026290
[MDTB] marine metagenome; seawater
2904
2980
+
Pro
GGG
[ENA]
¡û
>WENV170866028
MDTB01127584
[MDTB] marine metagenome; seawater
8060
7984
-
Pro
GGG
[ENA]
¡û
>WENV170870316
MDTB01190022
[MDTB] marine metagenome; seawater
50529
50453
-
Pro
GGG
[ENA]
¡û
>WENV170908689
MDTE01068131
[MDTE] marine metagenome; seawater
980
904
-
Pro
GGG
[ENA]
¡û
>WENV170948231
MEHZ011118644
[MEHZ] marine metagenome; marine surface water
142
218
+
Pro
GGG
[ENA]
¡û
>W2011396405
RCFQ01000009
Candidatius Mariprofundia
Mariprofundus sp. EBB-1 [RCFQ]
17917
17841
-
Pro
GGG
[ENA]
¡û
>W2110078909
CAESAR020000076
Gammaproteobacteria
Bathymodiolus thermophilus thioautotrophic gill symbiont [CAESAR]
68124
68048
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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