This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241638 (133 seq.)
>C171055715
CP017042
Bacillota
Selenomonas sp. oral taxon 920 W5150 [CP017042]
1636600
1636525
-
His
GTG
-
¡û
>W131002918
AGZT01000003
Bacillota
Selenomonas sp. F0473 [AGZT]
148
223
+
His
GTG
[ENA]
¡û
>W131228279
AUFU01000010
Bacillota
Selenomonas artemidis DSM 19719 [AUFU]
587
662
+
His
GTG
[ENA]
¡û
>W131232337
AUJE01000011
Bacillota
Selenomonas ruminantium subsp. ruminantium ATCC 12561 [AUJE]
341
416
+
His
GTG
[ENA]
¡û
>WENV180002059
FLNX01004589
[FLNX] bioreactor metagenome; Moose rumen
21372
21297
-
His
GTG
[ENA]
¢þ
>WENV180008466
FLSB01035293
[FLSB] metagenome; saliva
214
289
+
His
GTG
[ENA]
¢þ
>W141042515
AMEO01000006
Bacillota
Selenomonas sp. oral taxon 138 oral taxon 138 str. F0429 [AMEO]
12666
12591
-
His
GTG
[ENA]
¡û
>WENV180498765
OCAG01001715
[OCAG] human gut metagenome; faeces
5408
5333
-
His
GTG
[ENA]
¢þ
>WENV180551378
OCJF01016648
[OCJF] human oral metagenome; human oral
294
369
+
His
GTG
[ENA]
¢þ
>WENV180665591
OCVV011191264
[OCVV] gut metagenome; gut
272
197
-
His
GTG
[ENA]
¢þ
>WENV180665594
OCVV011191264
[OCVV] gut metagenome; gut
272
197
-
His
GTG
[ENA]
¢þ
>WENV180709254
ODFJ01040566
[ODFJ] human metagenome; G_DNA_Tongue dorsum
104
179
+
His
GTG
[ENA]
¢þ
>WENV180719795
ODGJ01005855
[ODGJ] human metagenome; G_DNA_Tongue dorsum
107
182
+
His
GTG
[ENA]
¢þ
>WENV180725261
ODGR01026412
[ODGR] human metagenome; G_DNA_Tongue dorsum
107
182
+
His
GTG
[ENA]
¢þ
>WENV180725749
ODGS01001700
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
5814
5739
-
His
GTG
[ENA]
¢þ
>WENV180728931
ODGU01126415
[ODGU] human metagenome; G_DNA_Supragingival plaque
153
78
-
His
GTG
[ENA]
¢þ
>WENV180729167
ODGU01234830
[ODGU] human metagenome; G_DNA_Supragingival plaque
171
246
+
His
GTG
[ENA]
¢þ
>WENV180729279
ODGU01317411
[ODGU] human metagenome; G_DNA_Supragingival plaque
105
180
+
His
GTG
[ENA]
¢þ
>WENV180734499
ODGZ01010607
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2664
2589
-
His
GTG
[ENA]
¢þ
>WENV180757165
ODHW01000068
[ODHW] human metagenome; G_DNA_Tongue dorsum
107
182
+
His
GTG
[ENA]
¢þ
>WENV180763720
ODIA01003979
[ODIA] human metagenome; G_DNA_Tongue dorsum
106
181
+
His
GTG
[ENA]
¢þ
>WENV180769163
ODIG01039004
[ODIG] human metagenome; G_DNA_Tongue dorsum
1132
1057
-
His
GTG
[ENA]
¢þ
>WENV180775071
ODIJ01197244
[ODIJ] human metagenome; G_DNA_Tongue dorsum
42
117
+
His
GTG
[ENA]
¢þ
>WENV180776442
ODIK01041045
[ODIK] human metagenome; G_DNA_Tongue dorsum
276
351
+
His
GTG
[ENA]
¢þ
>WENV180787562
ODIS01008480
[ODIS] human metagenome; G_DNA_Supragingival plaque
521
596
+
His
GTG
[ENA]
¢þ
>WENV180790674
ODIT01028744
[ODIT] human metagenome; G_DNA_Tongue dorsum
441
366
-
His
GTG
[ENA]
¢þ
>WENV180793761
ODIW01066253
[ODIW] human metagenome; G_DNA_Tongue dorsum
107
182
+
His
GTG
[ENA]
¢þ
>WENV180795383
ODIZ01157959
[ODIZ] human metagenome; G_DNA_Tongue dorsum
22
97
+
His
GTG
[ENA]
¢þ
>WENV180796139
ODJB01001552
[ODJB] human metagenome; G_DNA_Supragingival plaque
412
487
+
His
GTG
[ENA]
¢þ
>WENV180797146
ODJB01032267
[ODJB] human metagenome; G_DNA_Supragingival plaque
1475
1400
-
His
GTG
[ENA]
¢þ
>WENV180798330
ODJB01429024
[ODJB] human metagenome; G_DNA_Supragingival plaque
153
78
-
His
GTG
[ENA]
¢þ
>WENV180801489
ODJD01040000
[ODJD] human metagenome; G_DNA_Supragingival plaque
178
103
-
His
GTG
[ENA]
¢þ
>WENV180802592
ODJE01003955
[ODJE] human metagenome; G_DNA_Tongue dorsum
5006
4931
-
His
GTG
[ENA]
¢þ
>WENV180804149
ODJG01000714
[ODJG] human metagenome; G_DNA_Supragingival plaque
435
510
+
His
GTG
[ENA]
¢þ
>WENV180815980
ODJP01003082
[ODJP] human metagenome; G_DNA_Tongue dorsum
107
182
+
His
GTG
[ENA]
¢þ
>WENV180819269
ODJR01000028
[ODJR] human metagenome; G_DNA_Tongue dorsum
106
181
+
His
GTG
[ENA]
¢þ
>WENV180823734
ODJW01133497
[ODJW] human metagenome; G_DNA_Supragingival plaque
132
207
+
His
GTG
[ENA]
¢þ
>WENV180835657
ODKE01007303
[ODKE] human metagenome; G_DNA_Supragingival plaque
3254
3179
-
His
GTG
[ENA]
¢þ
>WENV180843760
ODKN01010747
[ODKN] human metagenome; G_DNA_Supragingival plaque
2441
2366
-
His
GTG
[ENA]
¢þ
>WENV180854838
ODKX01012666
[ODKX] human metagenome; G_DNA_Tongue dorsum
2359
2284
-
His
GTG
[ENA]
¢þ
>WENV180861866
ODLE01015664
[ODLE] human metagenome; G_DNA_Tongue dorsum
1860
1785
-
His
GTG
[ENA]
¢þ
>WENV180864275
ODLH01021333
[ODLH] human metagenome; G_DNA_Tongue dorsum
1279
1204
-
His
GTG
[ENA]
¢þ
>WENV180879108
ODLZ01000048
[ODLZ] human metagenome; G_DNA_Tongue dorsum
86
161
+
His
GTG
[ENA]
¢þ
>WENV180879775
ODLZ01002574
[ODLZ] human metagenome; G_DNA_Tongue dorsum
1121
1196
+
His
GTG
[ENA]
¢þ
>WENV180883442
ODMC01005324
[ODMC] human metagenome; G_DNA_Tongue dorsum
5435
5360
-
His
GTG
[ENA]
¢þ
>WENV180888140
ODMN01000084
[ODMN] human metagenome; G_DNA_Supragingival plaque
414
489
+
His
GTG
[ENA]
¢þ
>WENV180896584
ODNI01001141
[ODNI] human metagenome; G_DNA_Tongue dorsum
107
182
+
His
GTG
[ENA]
¢þ
>WENV180900717
ODOJ01006859
[ODOJ] human metagenome; G_DNA_Tongue dorsum
2978
2903
-
His
GTG
[ENA]
¢þ
>WENV180902402
ODOK01050803
[ODOK] human metagenome; G_DNA_Tongue dorsum
23
98
+
His
GTG
[ENA]
¢þ
>WENV180922941
ODTJ01021025
[ODTJ] human metagenome; G_DNA_Supragingival plaque
158
233
+
His
GTG
[ENA]
¢þ
>WENV180924784
ODTK01015770
[ODTK] human metagenome; G_DNA_Supragingival plaque
136
211
+
His
GTG
[ENA]
¢þ
>WENV180929572
ODTN01005020
[ODTN] human metagenome; G_DNA_Tongue dorsum
107
182
+
His
GTG
[ENA]
¢þ
>WENV180931408
ODTP01003676
[ODTP] human metagenome; G_DNA_Tongue dorsum
106
181
+
His
GTG
[ENA]
¢þ
>WENV180939768
ODTX01085951
[ODTX] human metagenome; G_DNA_Supragingival plaque
431
356
-
His
GTG
[ENA]
¢þ
>WENV180944153
ODUC01009145
[ODUC] human metagenome; G_DNA_Supragingival plaque
138
213
+
His
GTG
[ENA]
¢þ
>WENV180948806
ODUG01004226
[ODUG] human metagenome; G_DNA_Tongue dorsum
106
181
+
His
GTG
[ENA]
¢þ
>WENV180951968
ODUH01087106
[ODUH] human metagenome; G_DNA_Subgingival plaque
432
356
-
His
GTG
[ENA]
¢þ
>WENV180953464
ODUI01037149
[ODUI] human metagenome; G_DNA_Tongue dorsum
469
544
+
His
GTG
[ENA]
¢þ
>WENV180955250
ODUJ01056914
[ODUJ] human metagenome; G_DNA_Tongue dorsum
115
40
-
His
GTG
[ENA]
¢þ
>WENV180968169
ODUT01012081
[ODUT] human metagenome; G_DNA_Tongue dorsum
2331
2256
-
His
GTG
[ENA]
¢þ
>WENV180968717
ODUT01063686
[ODUT] human metagenome; G_DNA_Tongue dorsum
414
489
+
His
GTG
[ENA]
¢þ
>WENV180975677
ODUY01015494
[ODUY] human metagenome; G_DNA_Supragingival plaque
406
481
+
His
GTG
[ENA]
¢þ
>WENV180979761
ODVC01001576
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
1167
1092
-
His
GTG
[ENA]
¢þ
>WENV180981778
ODVE01059416
[ODVE] human metagenome; G_DNA_Supragingival plaque
93
168
+
His
GTG
[ENA]
¢þ
>WENV181003668
ODVX01022777
[ODVX] human metagenome; G_DNA_Supragingival plaque
290
365
+
His
GTG
[ENA]
¢þ
>WENV181009814
ODWE01245090
[ODWE] human metagenome; G_DNA_Supragingival plaque
110
185
+
His
GTG
[ENA]
¢þ
>WENV181014146
ODWN01016096
[ODWN] human metagenome; G_DNA_Tongue dorsum
106
181
+
His
GTG
[ENA]
¢þ
>WENV181021626
ODWV01024100
[ODWV] human metagenome; G_DNA_Tongue dorsum
279
204
-
His
GTG
[ENA]
¢þ
>WENV181033287
ODXN01004524
[ODXN] human metagenome; G_DNA_Tongue dorsum
107
182
+
His
GTG
[ENA]
¢þ
>WENV181038780
ODXQ01004486
[ODXQ] human metagenome; G_DNA_Tongue dorsum
7079
7004
-
His
GTG
[ENA]
¢þ
>WENV181045581
ODXW01000585
[ODXW] human metagenome; G_DNA_Tongue dorsum
106
181
+
His
GTG
[ENA]
¢þ
>WENV181058615
ODYL01020790
[ODYL] human metagenome; G_DNA_Tongue dorsum
97
172
+
His
GTG
[ENA]
¢þ
>WENV181063055
ODYP01000038
[ODYP] human metagenome; G_DNA_Supragingival plaque
124255
124180
-
His
GTG
[ENA]
¢þ
>WENV181063974
ODYP01006945
[ODYP] human metagenome; G_DNA_Supragingival plaque
285
360
+
His
GTG
[ENA]
¢þ
>WENV181066833
ODZI01002324
[ODZI] human metagenome; G_DNA_Supragingival plaque
7651
7576
-
His
GTG
[ENA]
¢þ
>WENV181074031
OEAO01002533
[OEAO] human metagenome; G_DNA_Tongue dorsum
60
135
+
His
GTG
[ENA]
¢þ
>WENV181087445
OEAY01045336
[OEAY] human metagenome; G_DNA_Tongue dorsum
107
182
+
His
GTG
[ENA]
¢þ
>WENV181090894
OEBC01006028
[OEBC] human metagenome; G_DNA_Supragingival plaque
107
182
+
His
GTG
[ENA]
¢þ
>WENV181094245
OEBY01000032
[OEBY] human metagenome; G_DNA_Tongue dorsum
125404
125329
-
His
GTG
[ENA]
¢þ
>WENV181102695
OECT01008088
[OECT] human metagenome; G_DNA_Tongue dorsum
107
182
+
His
GTG
[ENA]
¢þ
>WENV181103860
OECV01006579
[OECV] human metagenome; G_DNA_Throat
101
176
+
His
GTG
[ENA]
¢þ
>WENV181105456
OEED01004720
[OEED] human metagenome; G_DNA_Tongue dorsum
5441
5366
-
His
GTG
[ENA]
¢þ
>WENV181107437
OEEI01007706
[OEEI] human metagenome; G_DNA_Supragingival plaque
2121
2046
-
His
GTG
[ENA]
¢þ
>WENV181108184
OEEI01126146
[OEEI] human metagenome; G_DNA_Supragingival plaque
107
182
+
His
GTG
[ENA]
¢þ
>WENV181113032
OEEL01009374
[OEEL] human metagenome; G_DNA_Tongue dorsum
106
181
+
His
GTG
[ENA]
¢þ
>WENV181120304
OEFJ01022059
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
349
274
-
His
GTG
[ENA]
¢þ
>WENV181129664
OEFX01072902
[OEFX] human metagenome; G_DNA_Tongue dorsum
76
1
-
His
GTG
[ENA]
¢þ
>WENV181135549
OEGG01034261
[OEGG] human metagenome; G_DNA_Tongue dorsum
32
107
+
His
GTG
[ENA]
¢þ
>WENV181136592
OEGI01016833
[OEGI] human metagenome; G_DNA_Supragingival plaque
371
296
-
His
GTG
[ENA]
¢þ
>WENV181137546
OEGJ01006444
[OEGJ] human metagenome; G_DNA_Supragingival plaque
3254
3179
-
His
GTG
[ENA]
¢þ
>WENV181143515
OEHM01001667
[OEHM] human metagenome; G_DNA_Supragingival plaque
310
385
+
His
GTG
[ENA]
¢þ
>WENV181158105
OEIG01140143
[OEIG] human metagenome; G_DNA_Hard palate
99
174
+
His
GTG
[ENA]
¢þ
>WENV181176633
OEJR01017050
[OEJR] human metagenome; G_DNA_Saliva
106
181
+
His
GTG
[ENA]
¢þ
>WENV181179185
OEJT01001789
[OEJT] human metagenome; G_DNA_Supragingival plaque
10282
10207
-
His
GTG
[ENA]
¢þ
>WENV181182885
OEJV01066795
[OEJV] human metagenome; G_DNA_Supragingival plaque
108
183
+
His
GTG
[ENA]
¢þ
>W141146110
AWVG01000006
Bacillota
Selenomonas sp. oral taxon 892 oral taxon 892 str. F0426 [AWVG]
66677
66602
-
His
GTG
[ENA]
¡û
>W141146601
AWVT01000009
Bacillota
Mitsuokella sp. oral taxon 131 oral taxon 131 str. W9106 [AWVT]
37
112
+
His
GTG
[ENA]
¡û
>WENV181502547
OGGI01061614
[OGGI] metagenome; Human gut stool
93
168
+
His
GTG
[ENA]
¢þ
>WENV183509328
OMHH01009840
[OMHH] human oral metagenome; human oral
51
126
+
His
GTG
[ENA]
¢þ
>WENV183762383
PPYE01275618
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
19412
19337
-
His
GTG
[ENA]
¢þ
>WENV183789026
PPYF01373171
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2934
2859
-
His
GTG
[ENA]
¢þ
>WENV183792877
PPYF01464548
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2765
2690
-
His
GTG
[ENA]
¢þ
>W141563591
JIAC01000001
Bacillota
Selenomonas ruminantium AC2024 [JIAC]
923027
923102
+
His
GTG
[ENA]
¡û
>W09127442
ACLA01000010
Bacillota
Selenomonas flueggei ATCC 43531 [ACLA]
383
458
+
His
GTG
[ENA]
¡û
>W141703541
JMME01000012
Bacillota
Selenomonas sp. AE3005 [JMME]
448
523
+
His
GTG
[ENA]
¡û
>W141730725
JNIO01000002
Bacillota
Selenomonas ruminantium AB3002 [JNIO]
701852
701777
-
His
GTG
[ENA]
¡û
>W141731532
JNJF01000006
Bacillota
Selenomonas sp. FC4001 [JNJF]
191
266
+
His
GTG
[ENA]
¡û
>W141732808
JNKI01000061
Bacillota
Selenomonas sp. ND2010 [JNKI]
2089
2014
-
His
GTG
[ENA]
¡û
>W141733215
JNKR01000005
Bacillota
Mitsuokella jalaludinii DSM 13811 [JNKR]
359
434
+
His
GTG
[ENA]
¡û
>W1910503340
FYCJ01000003
Bacillota
Selenomonas felix Marseille-P3560 [FYCJ]
2997
2922
-
His
GTG
[ENA]
¡û
>W1911534781
OLMJ01000009
Bacillota
Selenomonas massiliensis Marseille-P4036 [OLMJ]
17889
17814
-
His
GTG
[ENA]
¡û
>C151090529
CP012071
Bacillota
Selenomonas sp. oral taxon 478 F0592 [CP012071]
2202362
2202287
-
His
GTG
-
¡û
>W10127446
AEEJ01000022
Bacillota
Selenomonas sp. oral taxon 149 oral taxon 149 str. 67H29BP [AEEJ]
3134
3059
-
His
GTG
[ENA]
¡û
>W11133165
AECV01000001
Bacillota
Selenomonas artemidis F0399 [AECV]
434112
434037
-
His
GTG
[ENA]
¡û
>W11134934
AEEJ01000022
Bacillota
Selenomonas sp. oral taxon 149 oral taxon 149 str. 67H29BP [AEEJ]
3134
3059
-
His
GTG
[ENA]
¡û
>W11141457
AENV01000009
Bacillota
Selenomonas sp. oral taxon 137 oral taxon 137 str. F0430 [AENV]
145820
145745
-
His
GTG
[ENA]
¡û
>W11163271
AFHQ01000045
Bacillota
Centipeda periodontii DSM 2778 [AFHQ]
1279
1204
-
His
GTG
[ENA]
¡û
>C121000975
AP012292
Bacillota
Selenomonas ruminantium subsp. lactilytica TAM6421 [AP012292]
2672136
2672061
-
His
GTG
[Ensembl]
¡û
>C161069265
CP014239
Bacillota
Selenomonas sp. oral taxon 136 F0591 [CP014239]
2422851
2422776
-
His
GTG
[Ensembl]
¡û
>C161094939
CP016201
Bacillota
Selenomonas sp. oral taxon 126 W7667 [CP016201]
1869481
1869556
+
His
GTG
[Ensembl]
¡û
>W121001270
ACZM01000001
Bacillota
Selenomonas infelix ATCC 43532 [ACZM]
751
826
+
His
GTG
[ENA]
¡û
>W121111702
ALJR01000022
Bacillota
Selenomonas sp. FOBRC9 [ALJR]
429
504
+
His
GTG
[ENA]
¡û
>W121112160
ALKG01000129
Bacillota
Selenomonas sp. FOBRC6 [ALKG]
5287
5212
-
His
GTG
[ENA]
¡û
>WENV083172
BAAX01005195
Gut microbiome of Human (healthy human sample F2-V, Adult, Male)
1527
1450
-
His
GTG
[ENA]
>W1710516322
FNCM01000017
Bacillota
Selenomonas ruminantium [FNCM]
50394
50319
-
His
GTG
[ENA]
¡û
>W1710525589
FNJQ01000060
Bacillota
Selenomonas ruminantium [FNJQ]
336
411
+
His
GTG
[ENA]
¡û
>W1710532373
FNQG01000013
Bacillota
Selenomonas ruminantium [FNQG]
128
203
+
His
GTG
[ENA]
¡û
>W1710540135
FNWN01000006
Bacillota
Selenomonas ruminantium [FNWN]
187570
187495
-
His
GTG
[ENA]
¡û
>W1710556008
FOJX01000002
Bacillota
Selenomonas ruminantium [FOJX]
358
433
+
His
GTG
[ENA]
¡û
>W1710564313
FOQK01000017
Bacillota
Selenomonas ruminantium [FOQK]
579
654
+
His
GTG
[ENA]
¡û
>W1710577572
FPAX01000011
Bacillota
Selenomonas ruminantium [FPAX]
409
484
+
His
GTG
[ENA]
¡û
>W1710580055
FPJA01000007
Bacillota
Selenomonas ruminantium [FPJA]
290974
290899
-
His
GTG
[ENA]
¡û
>W1710590563
FRBC01000006
Bacillota
Selenomonas ruminantium [FRBC]
127191
127116
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK