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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24190 (44 seq.)
>W131108933
APGP01000030
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
175323
175234
-
Leu
TAA
[ENA]
¡û
>W131218314
ATXO01000013
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
4598
4509
-
Leu
TAA
[ENA]
¡û
>C006920
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2324236
2324147
-
Leu
TAA
[Ensembl]
¡û
>WENV181226047
OFDK01000009
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
116
205
+
Leu
TAA
[ENA]
¢þ
>WENV181285457
OFGS01000528
[OFGS] hot springs metagenome; Water and soil
3792
3881
+
Leu
TAA
[ENA]
¢þ
>WENV181408651
OGCH01007511
[OGCH] hot springs metagenome; hot springs
2177
2266
+
Leu
TAA
[ENA]
¢þ
>C191131106
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1091237
1091326
+
Leu
TAA
-
¡û
>W09104556
AALW01000063
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
557
468
-
Leu
TAA
[ENA]
¡û
>W09113801
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
233557
233646
+
Leu
TAA
[ENA]
¡û
>C09100856
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1603705
1603616
-
Leu
TAA
[Ensembl]
¡û
>W1911155361
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1784081
1783992
-
Leu
TAA
[ENA]
¡û
>W1911244053
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
941536
941447
-
Leu
TAA
[ENA]
¡û
>W1911244101
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1321023
1320934
-
Leu
TAA
[ENA]
¡û
>W1911244142
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1873988
1873899
-
Leu
TAA
[ENA]
¡û
>W1911244178
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1217154
1217243
+
Leu
TAA
[ENA]
¡û
>W1911244211
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
626108
626197
+
Leu
TAA
[ENA]
¡û
>W1911572541
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1155330
1155419
+
Leu
TAA
[ENA]
¡û
>W1911572595
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2580363
2580274
-
Leu
TAA
[ENA]
¡û
>W1911572636
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1258315
1258404
+
Leu
TAA
[ENA]
¡û
>W1810052246
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
712363
712452
+
Leu
TAA
[ENA]
¡û
>W1810071894
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1201422
1201511
+
Leu
TAA
[ENA]
¡û
>W1810071943
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2219165
2219254
+
Leu
TAA
[ENA]
¡û
>W1810071997
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2506421
2506332
-
Leu
TAA
[ENA]
¡û
>W1810368022
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2369460
2369371
-
Leu
TAA
[ENA]
¡û
>C10103641
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1155132
1155221
+
Leu
TAA
[Ensembl]
¡û
>C11105211
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1249910
1249999
+
Leu
TAA
[Ensembl]
¡û
>C11105403
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1595276
1595187
-
Leu
TAA
[Ensembl]
¡û
>C11105436
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1368221
1368310
+
Leu
TAA
[Ensembl]
¡û
>C11105497
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
989291
989202
-
Leu
TAA
[Ensembl]
¡û
>C11105878
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1381400
1381311
-
Leu
TAA
[Ensembl]
¡û
>W11139370
AEKB01000001
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
118536
118447
-
Leu
TAA
[ENA]
¡û
>W11139440
AEKC01000047
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
8604
8693
+
Leu
TAA
[ENA]
¡û
>W11139490
AEKD01000073
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
2204
2293
+
Leu
TAA
[ENA]
¡û
>W1511563971
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1772193
1772104
-
Leu
TAA
[ENA]
¡û
>W1511564007
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
488701
488612
-
Leu
TAA
[ENA]
¡û
>W1511564052
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1192464
1192553
+
Leu
TAA
[ENA]
¡û
>W1710603744
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1700028
1700117
+
Leu
TAA
[ENA]
¡û
>W1710603842
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
757252
757163
-
Leu
TAA
[ENA]
¡û
>W1710603929
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1704088
1703999
-
Leu
TAA
[ENA]
¡û
>W1710605092
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
769211
769122
-
Leu
TAA
[ENA]
¡û
>W1710609666
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1618671
1618760
+
Leu
TAA
[ENA]
¡û
>W1710609704
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1019822
1019911
+
Leu
TAA
[ENA]
¡û
>W1710609773
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1875643
1875554
-
Leu
TAA
[ENA]
¡û
>W1710609819
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1868185
1868096
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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