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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242022 (49 seq.)
>C171057621
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
2011108
2011183
+
Ile
GAT
-
¡û
>C171057623
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
2017868
2017943
+
Ile
GAT
-
¡û
>C171057627
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
2531300
2531375
+
Ile
GAT
-
¡û
>C171057668
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
1131909
1131834
-
Ile
GAT
-
¡û
>W131145884
AQGK01000001
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
3302
3377
+
Ile
GAT
[ENA]
¡û
>W131145893
AQGK01000001
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
2927090
2927015
-
Ile
GAT
[ENA]
¡û
>W131145912
AQGK01000002
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
8148
8223
+
Ile
GAT
[ENA]
¡û
>W131145923
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
2233401
2233476
+
Ile
GAT
[ENA]
¡û
>W131145931
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
1687
1612
-
Ile
GAT
[ENA]
¡û
>w027825
ABCM01000034
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
26351
26272
-
Ile
GAT
[ENA]
¡û
>w027814
ABCM01000016
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
3513
3434
-
Ile
GAT
[ENA]
¡û
>w027810
ABCM01000012
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
3513
3434
-
Ile
GAT
[ENA]
¡û
>w027808
ABCM01000012
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
31731
31652
-
Ile
GAT
[ENA]
¡û
>w027804
ABCM01000011
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
35472
35393
-
Ile
GAT
[ENA]
¡û
>w027772
ABCM01000001
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
364036
363957
-
Ile
GAT
[ENA]
¡û
>WENV180028276
FTJA01041706
[FTJA] metagenome; soil
509
434
-
Ile
GAT
[ENA]
¢þ
>WENV180032114
FTJU01161104
[FTJU] metagenome; soil
77
2
-
Ile
GAT
[ENA]
¢þ
>WENV180099622
NMRC01021825
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
328
403
+
Ile
GAT
[ENA]
¢þ
>WENV180344602
OBLL01060765
[OBLL] soil metagenome; soil
158
83
-
Ile
GAT
[ENA]
¢þ
>W141142870
AWRU01000031
Bacteroidota
Pedobacter sp. V48 [AWRU]
174450
174375
-
Ile
GAT
[ENA]
¡û
>WENV183743486
PJUJ01002141
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
2418
2343
-
Ile
GAT
[ENA]
¢þ
>WENV183745135
PJUL01002931
[PJUL] feces metagenome; Chicken feces enriched on filter paper
2458
2383
-
Ile
GAT
[ENA]
¢þ
>WENV170956533
MJUP01044370
[MJUP] soil metagenome; viral particles from soil sample MGM
267
192
-
Ile
GAT
[ENA]
¢þ
>WENV170988887
MWVY01024206
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
76
1
-
Ile
GAT
[ENA]
¢þ
>WENV170990903
MWWA01068283
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
163
88
-
Ile
GAT
[ENA]
¢þ
>WENV170998141
MWWI01022740
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
205
282
+
Ile
GAT
[ENA]
¢þ
>C181001378
AP017313
Bacteroidota
Mucilaginibacter gotjawali SA3-7 [AP017313]
428118
428193
+
Ile
GAT
-
¡û
>C181001404
AP017313
Bacteroidota
Mucilaginibacter gotjawali SA3-7 [AP017313]
4721177
4721102
-
Ile
GAT
-
¡û
>C181094333
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
47666
47741
+
Ile
GAT
-
¡û
>C181094340
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
1194648
1194723
+
Ile
GAT
-
¡û
>C181094342
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
1382861
1382936
+
Ile
GAT
-
¡û
>C181094372
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
3648994
3648919
-
Ile
GAT
-
¡û
>C181094374
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
3642704
3642629
-
Ile
GAT
-
¡û
>C191226429
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
2058456
2058531
+
Ile
GAT
-
¡û
>C191226431
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
2065929
2066004
+
Ile
GAT
-
¡û
>C191226457
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
5920576
5920501
-
Ile
GAT
-
¡û
>C191226459
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
5912941
5912866
-
Ile
GAT
-
¡û
>W09109616
ABUJ01000050
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
515
590
+
Ile
GAT
[ENA]
¡û
>C09108543
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
1370191
1370266
+
Ile
GAT
[Ensembl]
¡û
>C09108557
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
4305860
4305785
-
Ile
GAT
[Ensembl]
¡û
>C09108559
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
4298539
4298464
-
Ile
GAT
[Ensembl]
¡û
>W1810405038
PYLS01000011
Bacteroidota
Pedobacter yulinensis YL28-9 [PYLS]
2277
2352
+
Ile
GAT
[ENA]
¡û
>W1810474646
QAIL01000243
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
1929
2004
+
Ile
GAT
[ENA]
¡û
>W1810477246
QAOQ01000016
Bacteroidota
Mucilaginibacter yixingensis DSM 26809 [QAOQ]
3631
3556
-
Ile
GAT
[ENA]
¡û
>W1810564227
QEAS01000049
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
3434
3359
-
Ile
GAT
[ENA]
¡û
>W1810676175
QKLU01000016
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
467
392
-
Ile
GAT
[ENA]
¡û
>W1710522123
FNGY01000028
Bacteroidota
Pedobacter steynii [FNGY]
3317
3242
-
Ile
GAT
[ENA]
¡û
>W1710602996
FUYR01000009
Bacteroidota
Daejeonella lutea luteus [FUYR]
3701
3626
-
Ile
GAT
[ENA]
¡û
>W1710606384
FWXT01000009
Bacteroidota
Pedobacter africanus [FWXT]
3475
3400
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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