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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242196 (27 seq.)
>W131180954
ARNN01000035
Betaproteobacteria
Vitreoscilla stercoraria DSM 513 [ARNN]
87728
87651
-
Pro
TGG
[ENA]
¡û
>W131180957
ARNN01000035
Betaproteobacteria
Vitreoscilla stercoraria DSM 513 [ARNN]
87401
87324
-
Pro
TGG
[ENA]
¡û
>W131180959
ARNN01000035
Betaproteobacteria
Vitreoscilla stercoraria DSM 513 [ARNN]
87196
87119
-
Pro
TGG
[ENA]
¡û
>WENV180933398
ODTR01000095
[ODTR] human metagenome; G_DNA_Supragingival plaque
8735
8812
+
Pro
TGG
[ENA]
¢þ
>WENV181179299
OEJT01002947
[OEJT] human metagenome; G_DNA_Supragingival plaque
243
166
-
Pro
TGG
[ENA]
¢þ
>WENV170658446
JTFP01113623
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
222
145
-
Pro
TGG
[ENA]
¢þ
>C181038344
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
89102
89025
-
Pro
TGG
-
¡û
>C181038347
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
88775
88698
-
Pro
TGG
-
¡û
>C181038349
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
88570
88493
-
Pro
TGG
-
¡û
>C181081271
CP023429
Betaproteobacteria
Neisseria weixii 10022 [CP023429]
2463164
2463087
-
Pro
TGG
-
¡û
>C181081274
CP023429
Betaproteobacteria
Neisseria weixii 10022 [CP023429]
2462887
2462810
-
Pro
TGG
-
¡û
>C191204125
LR134287
Betaproteobacteria
Neisseria animalis NCTC10212 [LR134287]
333173
333250
+
Pro
TGG
-
¡û
>W141816974
JQKH01000019
Betaproteobacteria
Alysiella crassa DSM 2578 [JQKH]
11234
11157
-
Pro
TGG
[ENA]
¡û
>W1810052218
PDBT02000088
Betaproteobacteria
Neisseria sp. N95_16 [PDBT]
6402
6325
-
Pro
TGG
[ENA]
¡û
>W1810052221
PDBT02000088
Betaproteobacteria
Neisseria sp. N95_16 [PDBT]
6125
6048
-
Pro
TGG
[ENA]
¡û
>W1810120624
PHTC01000015
Betaproteobacteria
Neisseria sp. N177_16 [PHTC]
6019
5942
-
Pro
TGG
[ENA]
¡û
>W1810120627
PHTC01000015
Betaproteobacteria
Neisseria sp. N177_16 [PHTC]
5742
5665
-
Pro
TGG
[ENA]
¡û
>W1810390522
PXYY01000003
Betaproteobacteria
Neisseria iguanae ATCC 51483 [PXYY]
21531
21454
-
Pro
TGG
[ENA]
¡û
>W1810390525
PXYY01000003
Betaproteobacteria
Neisseria iguanae ATCC 51483 [PXYY]
21256
21179
-
Pro
TGG
[ENA]
¡û
>W1810767515
QQEI01000003
Betaproteobacteria
Neisseria lactamica M37177 [QQEI]
54978
54901
-
Pro
TGG
[ENA]
¡û
>W11177475
AGAY01000056
Betaproteobacteria
Neisseria shayeganii 871 [AGAY]
32719
32642
-
Pro
TGG
[ENA]
¡û
>W1610074157
BCWL01000014
Betaproteobacteria
Bergeriella denitrificans NBRC 102155 [BCWL]
8227
8304
+
Pro
TGG
[ENA]
¡û
>W1610120976
CZPV01000005
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
171705
171782
+
Pro
TGG
[ENA]
¡û
>W1610120979
CZPV01000005
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
172047
172124
+
Pro
TGG
[ENA]
¡û
>W1710071275
BCWL01000014
Betaproteobacteria
Bergeriella denitrificans NBRC 102155 [BCWL]
8227
8304
+
Pro
TGG
[ENA]
¡û
>W1710123680
CZPV01000005
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
171705
171782
+
Pro
TGG
[ENA]
¡û
>W1710123683
CZPV01000005
Betaproteobacteria
Vitreoscilla massiliensis SN6 [CZPV]
172047
172124
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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