This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242597 (35 seq.)
>W1710802232
LJXT01000047
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
13228
13303
+
Phe
GAA
[ENA]
¡û
>W131146320
AQHR01000035
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
18549
18624
+
Phe
GAA
[ENA]
¡û
>W131167750
ARDN01000001
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
255615
255540
-
Phe
GAA
[ENA]
¡û
>W131179056
ARMB01000060
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
442947
443022
+
Phe
GAA
[ENA]
¡û
>W131211927
ATNM01000172
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
72282
72357
+
Phe
GAA
[ENA]
¡û
>W131228873
AUGI01000032
Bacteroidota
Hugenholtzia roseola DSM 9546 [AUGI]
62996
62921
-
Phe
GAA
[ENA]
¡û
>W131223102
AUBU01000008
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
332564
332489
-
Phe
GAA
[ENA]
¡û
>WENV180013989
FPIC01022479
[FPIC] soil metagenome; Soil
13494
13420
-
Phe
GAA
[ENA]
¢þ
>WENV181233916
OFET01000287
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
31892
31819
-
Phe
GAA
[ENA]
¢þ
>W141148149
AWXR01000012
Bacteroidota
Rhodonellum psychrophilum GCM71 = DSM 17998 [AWXR]
5288
5363
+
Phe
GAA
[ENA]
¡û
>W141278911
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
2437994
2438069
+
Phe
GAA
[ENA]
¡û
>C08000014
CP001102
Bacteroidota
Candidatus Amoebophilus asiaticus 5a2 [CP001102]
954544
954617
+
Phe
GAA
[Ensembl]
¡û
>WENV183748292
PPFU01025904
[PPFU] hypolithon metagenome; Antarctic Hypolithon
54
127
+
Phe
GAA
[ENA]
¢þ
>WENV170991386
MWWA01182180
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
315
242
-
Phe
GAA
[ENA]
¢þ
>C181187362
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
2574005
2573932
-
Phe
GAA
-
¡û
>C191062430
CP028923
Bacteroidota
Mangrovivirga cuniculi R1DC9 [CP028923]
708514
708441
-
Phe
GAA
-
¡û
>WENV002137
AACY020059267
Marine microbial communities from Global Ocean Sampling (GOS)
1080
1005
-
Phe
GAA
[ENA]
>C191175180
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
691466
691539
+
Phe
GAA
-
¡û
>C191189183
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
764558
764485
-
Phe
GAA
-
¡û
>W09107698
ABLI01000005
Bacteroidota
Candidatus Amoebophilus asiaticus asiaticus 5a2 [ABLI]
80946
81019
+
Phe
GAA
[ENA]
¡û
>W1910693722
MDGR01000007
Bacteroidota
Reichenbachiella sp. 5M10 [MDGR]
22913
22840
-
Phe
GAA
[ENA]
¡û
>W1910744958
MIER01000021
Bacteroidota
Reichenbachiella sp. MSK19-1 [MIER]
21127
21054
-
Phe
GAA
[ENA]
¡û
>W1910932889
NIUC01000002
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
1963523
1963450
-
Phe
GAA
[ENA]
¡û
>W1810531969
QCXY01000001
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
980940
980867
-
Phe
GAA
[ENA]
¡û
>C151090007
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
2468551
2468626
+
Phe
GAA
[Ensembl]
¡û
>C11105712
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
2469395
2469470
+
Phe
GAA
[Ensembl]
¡û
>C121011369
CP003345
Bacteroidota
Bernardetia litoralis DSM 6794 [CP003345]
1460047
1460122
+
Phe
GAA
[Ensembl]
¡û
>W121064831
AJMQ01000080
Bacteroidota
Marinilabilia nitratireducens AK2 [AJMQ]
37724
37799
+
Phe
GAA
[ENA]
¡û
>C131003315
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
817192
817117
-
Phe
GAA
[Ensembl]
¡û
>W1610666089
LJXT01000047
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
13228
13303
+
Phe
GAA
[ENA]
¡û
>W1710532179
FNQC01000001
Bacteroidota
Rhodonellum ikkaensis [FNQC]
442749
442824
+
Phe
GAA
[ENA]
¡û
>W1710542621
FNZH01000003
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
181816
181889
+
Phe
GAA
[ENA]
¡û
>W1710589298
FRAA01000011
Bacteroidota
Reichenbachiella agariperforans [FRAA]
33857
33930
+
Phe
GAA
[ENA]
¡û
>W1710593057
FRCY01000002
Bacteroidota
Cyclobacterium lianum [FRCY]
540348
540273
-
Phe
GAA
[ENA]
¡û
>W1710606947
FWYF01000003
Bacteroidota
Reichenbachiella faecimaris [FWYF]
68500
68425
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK