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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242695 (20 seq.)
>C171000460
CP007121
Thermotogota
Thermosipho sp. 1070 [CP007121]
287025
286950
-
Ala
GGC
-
¡û
>C171000772
CP007223
Thermotogota
Thermosipho sp. 1063 [CP007223]
286889
286814
-
Ala
GGC
-
¡û
>C171001405
CP007389
Thermotogota
Thermosipho melanesiensis 431 [CP007389]
57874
57799
-
Ala
GGC
-
¡û
>C025722
CP000716
Thermotogota
Thermosipho melanesiensis BI429 [CP000716]
57874
57799
-
Ala
GGC
[Ensembl]
¡û
>W141020319
AJIP01000043
Thermotogota
Thermosipho africanus H17ap60334 [AJIP]
16309
16234
-
Ala
GGC
[ENA]
¡û
>WENV170670440
LAHT01010849
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
1892
1967
+
Ala
GGC
[ENA]
¢þ
>WENV170670976
LAHU01006785
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
99
24
-
Ala
GGC
[ENA]
¢þ
>W09106591
AAWH01000012
Thermotogota
Thermosipho melanesiensis BI429 [AAWH]
16983
16908
-
Ala
GGC
[ENA]
¡û
>C09110489
CP001185
Thermotogota
Thermosipho africanus TCF52B [CP001185]
269428
269353
-
Ala
GGC
[Ensembl]
¡û
>W1910129000
BHXD01000004
Thermotogota
Thermosipho globiformans JCM 15059 [BHXD]
39055
39130
+
Ala
GGC
[ENA]
¡û
>W1910990259
NKRG01000001
Thermotogota
Thermosipho africanus Ob7 [NKRG]
297352
297427
+
Ala
GGC
[ENA]
¡û
>W1710586873
FQXN01000003
Thermotogota
Thermosipho atlanticus DSM 15807 [FQXN]
10995
11070
+
Ala
GGC
[ENA]
¡û
>W1710660935
JYCX01000001
Thermotogota
Thermosipho melanesiensis [JYCX]
57874
57799
-
Ala
GGC
[ENA]
¡û
>W1710660983
JYCY01000001
Thermotogota
Thermosipho melanesiensis [JYCY]
57874
57799
-
Ala
GGC
[ENA]
¡û
>W1710661029
JYCZ01000001
Thermotogota
Thermosipho melanesiensis [JYCZ]
57874
57799
-
Ala
GGC
[ENA]
¡û
>W1710661075
JYDA01000001
Thermotogota
Thermosipho melanesiensis [JYDA]
57769
57694
-
Ala
GGC
[ENA]
¡û
>W1710661119
JYDB01000001
Thermotogota
Thermosipho melanesiensis [JYDB]
57750
57675
-
Ala
GGC
[ENA]
¡û
>W1710701220
LBEX01000003
Thermotogota
Thermosipho sp. 1074 [LBEX]
222304
222229
-
Ala
GGC
[ENA]
¡û
>W1710701269
LBEY01000004
Thermotogota
Thermosipho sp. 1223 [LBEY]
13924
13849
-
Ala
GGC
[ENA]
¡û
>W1710701310
LBFC01000005
Thermotogota
Thermosipho affectus [LBFC]
45517
45442
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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