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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242704 (58 seq.)
>W1711283084
LZOF01000075
Spirochaetota
Brachyspira hampsonii [LZOF]
3350
3423
+
Gly
GCC
[ENA]
¡û
>W1711283107
LZOG01000147
Spirochaetota
Brachyspira hampsonii [LZOG]
2769
2842
+
Gly
GCC
[ENA]
¡û
>W1711307480
MAOX01000008
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
8698
8625
-
Gly
GCC
[ENA]
¡û
>W1711307503
MAOY01000001
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
114022
113949
-
Gly
GCC
[ENA]
¡û
>W1711351559
MDCO01000010
Spirochaetota
Brachyspira hampsonii [MDCO]
41715
41788
+
Gly
GCC
[ENA]
¡û
>W1711507049
MKXF01000019
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
68280
68353
+
Gly
GCC
[ENA]
¡û
>W131093650
AOMM01000332
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
2072
2145
+
Gly
GCC
[ENA]
¡û
>W131182380
ARQI01000099
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
2808
2881
+
Gly
GCC
[ENA]
¡û
>W131184507
ARSY01000046
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
318227
318154
-
Gly
GCC
[ENA]
¡û
>WENV180116943
OARB01000237
[OARB] human gut metagenome; ENVO:feces
1910
1983
+
Gly
GCC
[ENA]
¢þ
>WENV180117060
OARC01008632
[OARC] human gut metagenome; ENVO:feces
108
181
+
Gly
GCC
[ENA]
¢þ
>WENV180117804
OARM01000095
[OARM] human gut metagenome; ENVO:feces
8993
8920
-
Gly
GCC
[ENA]
¢þ
>W141037635
ALNZ01000025
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
3301
3374
+
Gly
GCC
[ENA]
¡û
>WENV181705284
OGPK01004712
[OGPK] human gut metagenome; faeces
44
117
+
Gly
GCC
[ENA]
¢þ
>W141275722
JADF01000007
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
14131
14058
-
Gly
GCC
[ENA]
¡û
>WENV182964678
OKWR01005861
[OKWR] human gut metagenome; human gut
3407
3334
-
Gly
GCC
[ENA]
¢þ
>WENV183384515
OLYN01005587
[OLYN] human gut metagenome; feces
433
506
+
Gly
GCC
[ENA]
¢þ
>WENV183423747
OMBG01006700
[OMBG] human gut metagenome; feces
3304
3231
-
Gly
GCC
[ENA]
¢þ
>WENV183447260
OMCS01003630
[OMCS] human gut metagenome; feces
4154
4081
-
Gly
GCC
[ENA]
¢þ
>WENV183651919
OQVU01008104
[OQVU] human gut metagenome; human gut
2638
2565
-
Gly
GCC
[ENA]
¢þ
>WENV183653057
OQVZ01002296
[OQVZ] human gut metagenome; human gut
3696
3623
-
Gly
GCC
[ENA]
¢þ
>WENV170785201
MDSP01001754
[MDSP] gut metagenome; Stomach gut content
1388
1315
-
Gly
GCC
[ENA]
¢þ
>WENV170785489
MDSP01079044
[MDSP] gut metagenome; Stomach gut content
629
556
-
Gly
GCC
[ENA]
¢þ
>C181038070
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
2281335
2281408
+
Gly
GCC
-
¡û
>C191017001
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
1195723
1195650
-
Gly
GCC
-
¡û
>W09108427
ABTG01000003
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
89640
89713
+
Gly
GCC
[ENA]
¡û
>W1910000001
AFQM01000001
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
39331
39404
+
Gly
GCC
[ENA]
¡û
>C09102341
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
2520976
2521049
+
Gly
GCC
[Ensembl]
¡û
>W1910569153
JJMJ01000250
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
4540
4613
+
Gly
GCC
[ENA]
¡û
>W1910569197
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
675398
675471
+
Gly
GCC
[ENA]
¡û
>W1910574875
JQIU01000007
Spirochaetota
Brachyspira sp. G79 [JQIU]
139796
139723
-
Gly
GCC
[ENA]
¡û
>C10101949
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
2296057
2296130
+
Gly
GCC
[Ensembl]
¡û
>C10101975
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1408788
1408861
+
Gly
GCC
[Ensembl]
¡û
>C11103121
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
2795081
2795008
-
Gly
GCC
[Ensembl]
¡û
>W1510641493
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
306451
306524
+
Gly
GCC
[ENA]
¡û
>W1511506940
JXNA01000042
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
3181
3254
+
Gly
GCC
[ENA]
¡û
>W1511506978
JXNB01000064
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
314250
314177
-
Gly
GCC
[ENA]
¡û
>W1511506993
JXNC01000003
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
3181
3254
+
Gly
GCC
[ENA]
¡û
>W1511507046
JXND01000038
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
3292
3365
+
Gly
GCC
[ENA]
¡û
>W1511507059
JXNE01000010
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
112635
112562
-
Gly
GCC
[ENA]
¡û
>W1511507106
JXNF01000061
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
3976
4049
+
Gly
GCC
[ENA]
¡û
>W1511507133
JXNG01000027
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
3177
3250
+
Gly
GCC
[ENA]
¡û
>W1511507173
JXNH01000076
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
322038
321965
-
Gly
GCC
[ENA]
¡û
>W1511507211
JXNI01000098
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
3883
3956
+
Gly
GCC
[ENA]
¡û
>W1511507218
JXNJ01000010
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
3623
3696
+
Gly
GCC
[ENA]
¡û
>W1511507249
JXNK01000009
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
2151
2224
+
Gly
GCC
[ENA]
¡û
>W1511507279
JXNL01000004
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
2151
2224
+
Gly
GCC
[ENA]
¡û
>W1511507312
JXNM01000006
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
115810
115737
-
Gly
GCC
[ENA]
¡û
>W1511507366
JXNN01000054
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
3670
3743
+
Gly
GCC
[ENA]
¡û
>W1511507395
JXNO01000061
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
3768
3841
+
Gly
GCC
[ENA]
¡û
>W1511507429
JXNP01000074
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
3634
3707
+
Gly
GCC
[ENA]
¡û
>W1511507445
JXNQ01000005
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
2140
2213
+
Gly
GCC
[ENA]
¡û
>W1511507480
JXNR01000028
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
3169
3242
+
Gly
GCC
[ENA]
¡û
>W1511507531
JXNS01000170
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
313887
313814
-
Gly
GCC
[ENA]
¡û
>C161092145
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
1197954
1197881
-
Gly
GCC
[Ensembl]
¡û
>C131001497
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
1821023
1820950
-
Gly
GCC
[Ensembl]
¡û
>C131003811
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
64500
64573
+
Gly
GCC
[Ensembl]
¡û
>C131019643
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
74218
74291
+
Gly
GCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK