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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242750 (109 seq.)
>W1710889381
LNAM01000210
Bacillota
Acetivibrio ethanolgignens [LNAM]
219
293
+
Val
TAC
[ENA]
¡û
>W1711609416
MOSV01000019
Bacillota
Clostridioides difficile [MOSV]
857
932
+
Val
TAC
[ENA]
¡û
>C171094823
CP019469
Bacillota
Clostridioides difficile LEM1 [CP019469]
19350
19275
-
Val
TAC
-
¡û
>C171128080
LN879430
Bacillota
Herbinix luporum SD1D [LN879430]
16717
16789
+
Val
TAC
-
¡û
>C171128114
LN879430
Bacillota
Herbinix luporum SD1D [LN879430]
2324731
2324657
-
Val
TAC
-
¡û
>W131231029
AUID01000001
Bacillota
Proteocatella sphenisci DSM 23131 [AUID]
168023
167948
-
Val
TAC
[ENA]
¡û
>WENV180951755
ODUH01051107
[ODUH] human metagenome; G_DNA_Subgingival plaque
233
158
-
Val
TAC
[ENA]
¢þ
>W141097368
AVGL01000009
Bacillota
Clostridioides difficile CD13 [AVGL]
975
1050
+
Val
TAC
[ENA]
¡û
>W141098078
AVHQ01000012
Bacillota
Clostridioides difficile CD131 [AVHQ]
501
576
+
Val
TAC
[ENA]
¡û
>W141102217
AVML01000007
Bacillota
Clostridioides difficile P46 [AVML]
110
185
+
Val
TAC
[ENA]
¡û
>WENV181081862
OEAS01439255
[OEAS] human metagenome; G_DNA_Supragingival plaque
57
132
+
Val
TAC
[ENA]
¢þ
>WENV181235754
OFEY01002541
[OFEY] mouse gut metagenome; faeces
9519
9593
+
Val
TAC
[ENA]
¢þ
>WENV181236528
OFEZ01001800
[OFEZ] mouse gut metagenome; faeces
9418
9492
+
Val
TAC
[ENA]
¢þ
>WENV181248439
OFFL01004066
[OFFL] mouse gut metagenome; faeces
4326
4400
+
Val
TAC
[ENA]
¢þ
>WENV181251978
OFFP01001526
[OFFP] mouse gut metagenome; faeces
137
63
-
Val
TAC
[ENA]
¢þ
>WENV181257551
OFFU01001421
[OFFU] mouse gut metagenome; faeces
7554
7480
-
Val
TAC
[ENA]
¢þ
>WENV181261929
OFFY01000688
[OFFY] mouse gut metagenome; faeces
32811
32885
+
Val
TAC
[ENA]
¢þ
>WENV181268088
OFGD01000548
[OFGD] mouse gut metagenome; faeces
22438
22512
+
Val
TAC
[ENA]
¢þ
>WENV181270660
OFGF01000518
[OFGF] mouse gut metagenome; faeces
32829
32903
+
Val
TAC
[ENA]
¢þ
>WENV181273165
OFGH01000504
[OFGH] mouse gut metagenome; faeces
147
73
-
Val
TAC
[ENA]
¢þ
>WENV181276205
OFGK01001002
[OFGK] mouse gut metagenome; faeces
17308
17382
+
Val
TAC
[ENA]
¢þ
>WENV181278261
OFGM01000505
[OFGM] mouse gut metagenome; faeces
625
551
-
Val
TAC
[ENA]
¢þ
>WENV181279149
OFGN01000112
[OFGN] mouse gut metagenome; faeces
13469
13395
-
Val
TAC
[ENA]
¢þ
>WENV181283871
OFGQ01036579
[OFGQ] mouse gut metagenome; faeces
1064
1138
+
Val
TAC
[ENA]
¢þ
>WENV181284508
OFGR01001699
[OFGR] mouse gut metagenome; faeces
1361
1435
+
Val
TAC
[ENA]
¢þ
>WENV181289331
OFGZ01054386
[OFGZ] mouse gut metagenome; faeces
430
504
+
Val
TAC
[ENA]
¢þ
>W141246226
CAMH01000016
Bacillota
Clostridioides difficile E16 [CAMH]
482
557
+
Val
TAC
[ENA]
¡û
>W141246518
CAND01000067
Bacillota
Clostridioides difficile T61 [CAND]
478
553
+
Val
TAC
[ENA]
¡û
>WENV170019365
BBPD01009241
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1716
1641
-
Val
TAC
[ENA]
¢þ
>WENV170019841
BBPE01000969
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
407
332
-
Val
TAC
[ENA]
¢þ
>WENV170562181
CZCB01001319
[CZCB] anaerobic digester metagenome; anaerobic digester
105892
105817
-
Val
TAC
[ENA]
¢þ
>WENV170562285
CZCB01001879
[CZCB] anaerobic digester metagenome; anaerobic digester
13835
13910
+
Val
TAC
[ENA]
¢þ
>W141450954
JFAF01000013
Bacillota
Clostridioides difficile [JFAF]
567
642
+
Val
TAC
[ENA]
¡û
>W1910157521
BIOC01000379
Bacillota
Clostridioides difficile FD036 [BIOC]
1657
1582
-
Val
TAC
[ENA]
¡û
>W1910157952
BIOI01000091
Bacillota
Clostridioides difficile FD043 [BIOI]
1813
1738
-
Val
TAC
[ENA]
¡û
>W1910159091
BIOZ01000112
Bacillota
Clostridioides difficile FD060 [BIOZ]
480
555
+
Val
TAC
[ENA]
¡û
>W1910159440
BIPE01000193
Bacillota
Clostridioides difficile FD065 [BIPE]
586
661
+
Val
TAC
[ENA]
¡û
>W1910159511
BIPF01000146
Bacillota
Clostridioides difficile FD066 [BIPF]
382
457
+
Val
TAC
[ENA]
¡û
>W1910159858
BIPK01000108
Bacillota
Clostridioides difficile FD072 [BIPK]
663
738
+
Val
TAC
[ENA]
¡û
>W1910159933
BIPL01000112
Bacillota
Clostridioides difficile FD073 [BIPL]
1672
1597
-
Val
TAC
[ENA]
¡û
>W1910160425
BIPS01000136
Bacillota
Clostridioides difficile FD080 [BIPS]
718
793
+
Val
TAC
[ENA]
¡û
>W1910163411
BIRK01000062
Bacillota
Clostridioides difficile FD128 [BIRK]
41
116
+
Val
TAC
[ENA]
¡û
>W1910163449
BIRK01000104
Bacillota
Clostridioides difficile FD128 [BIRK]
1575
1500
-
Val
TAC
[ENA]
¡û
>W1910163467
BIRK01000112
Bacillota
Clostridioides difficile FD128 [BIRK]
231
156
-
Val
TAC
[ENA]
¡û
>W1910165063
BISH01000360
Bacillota
Clostridioides difficile FD152 [BISH]
1544
1469
-
Val
TAC
[ENA]
¡û
>W1910170378
BIVF01000236
Bacillota
Clostridioides difficile FD238 [BIVF]
1545
1470
-
Val
TAC
[ENA]
¡û
>W1910170809
BIVL01000138
Bacillota
Clostridioides difficile FD244 [BIVL]
697
772
+
Val
TAC
[ENA]
¡û
>W1910170878
BIVM01000124
Bacillota
Clostridioides difficile FD246 [BIVM]
1546
1471
-
Val
TAC
[ENA]
¡û
>W1910171928
BIWB01000341
Bacillota
Clostridioides difficile FD263 [BIWB]
1545
1470
-
Val
TAC
[ENA]
¡û
>W1910172693
BIWO01000169
Bacillota
Clostridioides difficile FD276 [BIWO]
769
844
+
Val
TAC
[ENA]
¡û
>W1910173799
BIXE01000194
Bacillota
Clostridioides difficile FD293 [BIXE]
1545
1470
-
Val
TAC
[ENA]
¡û
>W1910173977
BIXH01000271
Bacillota
Clostridioides difficile FD296 [BIXH]
1988
1913
-
Val
TAC
[ENA]
¡û
>W1910214175
FMKP01000023
Bacillota
Clostridioides difficile [FMKP]
2190
2115
-
Val
TAC
[ENA]
¡û
>W1910215702
FMLL01000011
Bacillota
Clostridioides difficile [FMLL]
1621
1546
-
Val
TAC
[ENA]
¡û
>W1910216036
FMLP01000038
Bacillota
Clostridioides difficile [FMLP]
1616
1541
-
Val
TAC
[ENA]
¡û
>W1910216159
FMLR01000030
Bacillota
Clostridioides difficile [FMLR]
462
537
+
Val
TAC
[ENA]
¡û
>W1910381711
FUMO01000029
Bacillota
Clostridioides difficile VRECD0170 [FUMO]
429
354
-
Val
TAC
[ENA]
¡û
>W1910382581
FUMY01000038
Bacillota
Clostridioides difficile VRECD0128 [FUMY]
2232
2157
-
Val
TAC
[ENA]
¡û
>W1910382826
FUNB01000035
Bacillota
Clostridioides difficile VRECD0122 [FUNB]
1702
1627
-
Val
TAC
[ENA]
¡û
>W1910384231
FUNS01000011
Bacillota
Clostridioides difficile VRECD0011 [FUNS]
57767
57692
-
Val
TAC
[ENA]
¡û
>W1910385223
FUOD01000012
Bacillota
Clostridioides difficile VRECD0053 [FUOD]
56882
56957
+
Val
TAC
[ENA]
¡û
>W1910386138
FUON01000018
Bacillota
Clostridioides difficile VRECD0081 [FUON]
708
633
-
Val
TAC
[ENA]
¡û
>W1910389304
FUPZ01000015
Bacillota
Clostridioides difficile VRECD0117 [FUPZ]
70433
70358
-
Val
TAC
[ENA]
¡û
>W1910389648
FUQD01000025
Bacillota
Clostridioides difficile VRECD0158 [FUQD]
462
537
+
Val
TAC
[ENA]
¡û
>W1910394498
FUSH01000023
Bacillota
Clostridioides difficile CD17 [FUSH]
1621
1546
-
Val
TAC
[ENA]
¡û
>W1910394558
FUSI01000029
Bacillota
Clostridioides difficile CD27 [FUSI]
1191
1116
-
Val
TAC
[ENA]
¡û
>W1910397166
FUTT01000027
Bacillota
Clostridioides difficile CD64 [FUTT]
1736
1661
-
Val
TAC
[ENA]
¡û
>W1910397330
FUTV01000044
Bacillota
Clostridioides difficile CD43 [FUTV]
504
579
+
Val
TAC
[ENA]
¡û
>W1910397720
FUUB01000025
Bacillota
Clostridioides difficile CD36 [FUUB]
1626
1551
-
Val
TAC
[ENA]
¡û
>W1910398272
FUUJ01000031
Bacillota
Clostridioides difficile CD13 [FUUJ]
804
729
-
Val
TAC
[ENA]
¡û
>W1910398618
FUUO01000017
Bacillota
Clostridioides difficile CD12 [FUUO]
1912
1837
-
Val
TAC
[ENA]
¡û
>W1910398760
FUUQ01000040
Bacillota
Clostridioides difficile CD08 [FUUQ]
462
537
+
Val
TAC
[ENA]
¡û
>W1910759141
MNBA01000124
Bacillota
Clostridioides difficile 5475-DH/ST42 [MNBA]
539
614
+
Val
TAC
[ENA]
¡û
>W1910759212
MNBB01000031
Bacillota
Clostridioides difficile 5477-AQ/ST26 [MNBB]
537
612
+
Val
TAC
[ENA]
¡û
>W1910771355
MOQC01000050
Bacillota
Clostridioides difficile 5550-AH/ST67 [MOQC]
588
663
+
Val
TAC
[ENA]
¡û
>W1910775141
MOTK01000028
Bacillota
Clostridioides difficile 6624-Y/ST13 [MOTK]
537
612
+
Val
TAC
[ENA]
¡û
>W1910778533
MPEW01000280
Bacillota
Clostridioides difficile 7456-DH/ST42 [MPEW]
950
1025
+
Val
TAC
[ENA]
¡û
>W1910779552
MPFI01000045
Bacillota
Clostridioides difficile 7476-Y/ST2 [MPFI]
537
612
+
Val
TAC
[ENA]
¡û
>W1910781494
MPGF01000025
Bacillota
Clostridioides difficile 7462-DH/ST42 [MPGF]
539
614
+
Val
TAC
[ENA]
¡û
>W1910783240
MPJQ01000024
Bacillota
Clostridioides difficile 6617-A/ST43 [MPJQ]
538
613
+
Val
TAC
[ENA]
¡û
>W1910871952
NCXL01000135
Bacillota
Clostridioides difficile LC693 [NCXL]
104
29
-
Val
TAC
[ENA]
¡û
>W1911594398
PNES01000080
Bacillota
Clostridioides difficile CD6 [PNES]
472
397
-
Val
TAC
[ENA]
¡û
>W1810721313
QNRW01000071
Bacillota
Herbinix hemicellulosilytica DSM 29228 [QNRW]
1280
1206
-
Val
TAC
[ENA]
¡û
>W1810723130
QNWA01000044
Bacillota
Clostridioides difficile GZ14 [QNWA]
532
607
+
Val
TAC
[ENA]
¡û
>W1810723903
QNWN01000048
Bacillota
Clostridioides difficile 6 [QNWN]
532
607
+
Val
TAC
[ENA]
¡û
>W1810724407
QNWV01000045
Bacillota
Clostridioides difficile ZR58 [QNWV]
512
587
+
Val
TAC
[ENA]
¡û
>W10113457
ADGE01000001
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
621
696
+
Val
TAC
[ENA]
¡û
>W10113464
ADGE01000033
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
4
79
+
Val
TAC
[ENA]
¡û
>W10113480
ADGE01000039
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
4
79
+
Val
TAC
[ENA]
¡û
>W10113501
ADGE01000047
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
709
784
+
Val
TAC
[ENA]
¡û
>W10113504
ADGE01000054
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
245
170
-
Val
TAC
[ENA]
¡û
>W10119211
ADVM01000096
Bacillota
Clostridioides difficile NAP07 [ADVM]
85
160
+
Val
TAC
[ENA]
¡û
>C11108988
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
1140531
1140456
-
Val
TAC
[Ensembl]
¡û
>C11109005
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
760638
760563
-
Val
TAC
[Ensembl]
¡û
>C11109022
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
715655
715580
-
Val
TAC
[Ensembl]
¡û
>W11116746
ADGE01000001
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
621
696
+
Val
TAC
[ENA]
¡û
>W11116753
ADGE01000033
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
4
79
+
Val
TAC
[ENA]
¡û
>W11116769
ADGE01000039
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
4
79
+
Val
TAC
[ENA]
¡û
>W11116790
ADGE01000047
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
709
784
+
Val
TAC
[ENA]
¡û
>W11116793
ADGE01000054
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
245
170
-
Val
TAC
[ENA]
¡û
>W11125431
ADVM01000096
Bacillota
Clostridioides difficile NAP07 [ADVM]
85
160
+
Val
TAC
[ENA]
¡û
>W1610134945
FABT01000625
Bacillota
Clostridioides difficile [FABT]
83
158
+
Val
TAC
[ENA]
¡û
>W1610148707
FAIB01000174
Bacillota
Clostridioides difficile [FAIB]
341
266
-
Val
TAC
[ENA]
¡û
>W1610157784
FAMC01000263
Bacillota
Clostridioides difficile [FAMC]
83
158
+
Val
TAC
[ENA]
¡û
>W1610749759
LNAM01000210
Bacillota
Acetivibrio ethanolgignens [LNAM]
219
293
+
Val
TAC
[ENA]
¡û
>W1710136612
FABT01000625
Bacillota
Clostridioides difficile [FABT]
83
158
+
Val
TAC
[ENA]
¡û
>W1710150374
FAIB01000174
Bacillota
Clostridioides difficile [FAIB]
341
266
-
Val
TAC
[ENA]
¡û
>W1710159451
FAMC01000263
Bacillota
Clostridioides difficile [FAMC]
83
158
+
Val
TAC
[ENA]
¡û
>W1710592592
FRCP01000008
Bacillota
Anaerosporobacter mobilis DSM 15930 [FRCP]
345440
345365
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK