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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242777 (101 seq.)
>W131051983
AMYG01000043
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
39496
39421
-
Phe
GAA
[ENA]
¡û
>W131052012
AMYG01000069
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
270
345
+
Phe
GAA
[ENA]
¡û
>W131167567
ARDJ01000017
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
89149
89074
-
Phe
GAA
[ENA]
¡û
>W131167589
ARDJ01000022
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
96176
96101
-
Phe
GAA
[ENA]
¡û
>C025847
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
2151433
2151358
-
Phe
GAA
[Ensembl]
¡û
>C025857
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
1682851
1682776
-
Phe
GAA
[Ensembl]
¡û
>w018998
AATV01000070
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
5612
5689
+
Phe
GAA
[ENA]
¡û
>w010204
AAKQ01000066
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
1195
1272
+
Phe
GAA
[ENA]
¡û
>w010169
AAKQ01000001
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
178500
178423
-
Phe
GAA
[ENA]
¡û
>WENV180503011
OCAM01001202
[OCAM] human gut metagenome; faeces
168
243
+
Phe
GAA
[ENA]
¢þ
>WENV180609102
OCPV01000310
[OCPV] human gut metagenome; human gut
22805
22880
+
Phe
GAA
[ENA]
¢þ
>W141092581
AVAF01000034
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
9112
9037
-
Phe
GAA
[ENA]
¡û
>W141092594
AVAF01000098
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
17174
17099
-
Phe
GAA
[ENA]
¡û
>WENV181226198
OFDK01000195
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
9098
9023
-
Phe
GAA
[ENA]
¢þ
>WENV181404279
OGBZ01009760
[OGBZ] sediment metagenome; hot spring sediment
317
392
+
Phe
GAA
[ENA]
¢þ
>WENV181424747
OGCQ01000002
[OGCQ] human gut metagenome; human gut
1
76
+
Phe
GAA
[ENA]
¢þ
>W141153105
AXDC01000002
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
147632
147707
+
Phe
GAA
[ENA]
¡û
>W141153151
AXDC01000076
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
600
675
+
Phe
GAA
[ENA]
¡û
>WENV181731774
OGQD01003382
[OGQD] human gut metagenome; faeces
7652
7577
-
Phe
GAA
[ENA]
¢þ
>W141193975
AYSN01000058
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
41390
41315
-
Phe
GAA
[ENA]
¡û
>W141194002
AYSN01000080
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
361
436
+
Phe
GAA
[ENA]
¡û
>WENV182126674
OHJU01000083
[OHJU] human gut metagenome; feces
34
109
+
Phe
GAA
[ENA]
¢þ
>WENV182392586
OIEG01050847
[OIEG] human gut metagenome; human gut
116
191
+
Phe
GAA
[ENA]
¢þ
>C08010955
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
929846
929921
+
Phe
GAA
[Ensembl]
¡û
>C08010972
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
2075755
2075683
-
Phe
GAA
[Ensembl]
¡û
>C08011041
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
444236
444311
+
Phe
GAA
[Ensembl]
¡û
>C08011051
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
809222
809297
+
Phe
GAA
[Ensembl]
¡û
>W141276461
JADV01000002
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
14855
14930
+
Phe
GAA
[ENA]
¡û
>W141276502
JADV01000026
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
611
686
+
Phe
GAA
[ENA]
¡û
>WENV183478804
OMFD01053481
[OMFD] human gut metagenome; feces
352
427
+
Phe
GAA
[ENA]
¢þ
>WENV170670104
LAHS01042355
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
183
258
+
Phe
GAA
[ENA]
¢þ
>WENV170675626
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
229208
229133
-
Phe
GAA
[ENA]
¢þ
>WENV170675633
LDZP01000170
[LDZP] terrestrial metagenome; oil reservoir sample I1
3113
3188
+
Phe
GAA
[ENA]
¢þ
>WENV170676254
LDZR01001872
[LDZR] terrestrial metagenome; oil reservoir sample K2
10557
10632
+
Phe
GAA
[ENA]
¢þ
>WENV170676522
LDZS01000604
[LDZS] terrestrial metagenome; oil reservoir sample K3
263
338
+
Phe
GAA
[ENA]
¢þ
>WENV170676894
LDZS01003104
[LDZS] terrestrial metagenome; oil reservoir sample K3
105
180
+
Phe
GAA
[ENA]
¢þ
>C191108125
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2739829
2739754
-
Phe
GAA
-
¡û
>C191108136
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2214851
2214776
-
Phe
GAA
-
¡û
>W09112162
ABXP01000185
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
5310
5385
+
Phe
GAA
[ENA]
¡û
>W09133526
ACPF01000019
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
30721
30646
-
Phe
GAA
[ENA]
¡û
>W09133562
ACPF01000148
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
276
351
+
Phe
GAA
[ENA]
¡û
>W09134111
ACQZ01000001
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
45717
45642
-
Phe
GAA
[ENA]
¡û
>W09134156
ACQZ01000051
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
9183
9108
-
Phe
GAA
[ENA]
¡û
>W09135035
ACVH01000002
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
12372
12447
+
Phe
GAA
[ENA]
¡û
>W09135072
ACVH01000067
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
306
381
+
Phe
GAA
[ENA]
¡û
>W09135172
ACVK01000035
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
21710
21635
-
Phe
GAA
[ENA]
¡û
>W09135183
ACVK01000044
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
8902
8827
-
Phe
GAA
[ENA]
¡û
>W09135860
ACXP01000016
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
37622
37547
-
Phe
GAA
[ENA]
¡û
>W09135880
ACXP01000031
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
364
439
+
Phe
GAA
[ENA]
¡û
>W1910976748
NKHD01000055
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
12685
12610
-
Phe
GAA
[ENA]
¡û
>W1910976751
NKHD01000056
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
8205
8280
+
Phe
GAA
[ENA]
¡û
>C151045319
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1939532
1939457
-
Phe
GAA
[Ensembl]
¡û
>C151045329
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1534072
1533997
-
Phe
GAA
[Ensembl]
¡û
>W10105922
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
30633
30708
+
Phe
GAA
[ENA]
¡û
>W10105957
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
422
497
+
Phe
GAA
[ENA]
¡û
>W10120486
ADXD01000021
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
30287
30362
+
Phe
GAA
[ENA]
¡û
>W10120519
ADXD01000095
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
790
865
+
Phe
GAA
[ENA]
¡û
>C10113401
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1986908
1986833
-
Phe
GAA
[Ensembl]
¡û
>C10113411
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1544381
1544306
-
Phe
GAA
[Ensembl]
¡û
>C10113457
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1919517
1919442
-
Phe
GAA
[Ensembl]
¡û
>C10113468
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1526087
1526012
-
Phe
GAA
[Ensembl]
¡û
>W11108245
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
30633
30708
+
Phe
GAA
[ENA]
¡û
>W11108280
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
422
497
+
Phe
GAA
[ENA]
¡û
>W1511275080
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
1472830
1472755
-
Phe
GAA
[ENA]
¡û
>W1511275092
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
925638
925563
-
Phe
GAA
[ENA]
¡û
>C11122468
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
439652
439727
+
Phe
GAA
[Ensembl]
¡û
>C11122478
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
801416
801491
+
Phe
GAA
[Ensembl]
¡û
>C11122711
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
878589
878664
+
Phe
GAA
[Ensembl]
¡û
>C11122730
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1984535
1984460
-
Phe
GAA
[Ensembl]
¡û
>C11123254
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2270118
2270043
-
Phe
GAA
[Ensembl]
¡û
>C11123265
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1665310
1665235
-
Phe
GAA
[Ensembl]
¡û
>C11123292
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
378634
378706
+
Phe
GAA
[Ensembl]
¡û
>C11123310
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
890605
890680
+
Phe
GAA
[Ensembl]
¡û
>W11127095
ADXD01000021
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
30287
30362
+
Phe
GAA
[ENA]
¡û
>W11127128
ADXD01000095
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
790
865
+
Phe
GAA
[ENA]
¡û
>W11150427
AEVQ01000002
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
225465
225390
-
Phe
GAA
[ENA]
¡û
>W11150464
AEVQ01000017
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
24519
24447
-
Phe
GAA
[ENA]
¡û
>W11152661
AEYS01000013
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
22885
22810
-
Phe
GAA
[ENA]
¡û
>W11152670
AEYS01000014
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
25282
25207
-
Phe
GAA
[ENA]
¡û
>W121068081
AJUD01000005
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
123372
123297
-
Phe
GAA
[ENA]
¡û
>W121068107
AJUD01000009
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
74610
74685
+
Phe
GAA
[ENA]
¡û
>W1610043666
BAZY01000021
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
6241
6316
+
Phe
GAA
[ENA]
¡û
>W1610043685
BAZY01000047
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
274
349
+
Phe
GAA
[ENA]
¡û
>C131001913
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
410050
410125
+
Phe
GAA
[Ensembl]
¡û
>C131001940
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
1968096
1968021
-
Phe
GAA
[Ensembl]
¡û
>W1610612258
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
229208
229133
-
Phe
GAA
[ENA]
¡û
>W1610612265
LGEO01000007
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
3113
3188
+
Phe
GAA
[ENA]
¡û
>W1610612656
LGEY01000064
Bacillota
Caldanaerobacter subterraneus [LGEY]
10557
10632
+
Phe
GAA
[ENA]
¡û
>W1610613190
LGFN01000208
Bacillota
Caldanaerobacter subterraneus [LGFN]
105
180
+
Phe
GAA
[ENA]
¡û
>W1710040826
BAZY01000021
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
6241
6316
+
Phe
GAA
[ENA]
¡û
>W1710040845
BAZY01000047
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
274
349
+
Phe
GAA
[ENA]
¡û
>W1710515313
FNBS01000018
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
7913
7838
-
Phe
GAA
[ENA]
¡û
>W1710515338
FNBS01000068
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
8829
8754
-
Phe
GAA
[ENA]
¡û
>W1710560360
FONI01000007
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
620
695
+
Phe
GAA
[ENA]
¡û
>W1710560373
FONI01000019
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
35111
35186
+
Phe
GAA
[ENA]
¡û
>W1710583293
FQUR01000009
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
218191
218116
-
Phe
GAA
[ENA]
¡û
>W1710583304
FQUR01000010
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
72001
72076
+
Phe
GAA
[ENA]
¡û
>W1710733764
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
229208
229133
-
Phe
GAA
[ENA]
¡û
>W1710733771
LGEO01000007
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
3113
3188
+
Phe
GAA
[ENA]
¡û
>W1710733977
LGEY01000064
Bacillota
Caldanaerobacter subterraneus [LGEY]
10557
10632
+
Phe
GAA
[ENA]
¡û
>W1710734397
LGFN01000208
Bacillota
Caldanaerobacter subterraneus [LGFN]
105
180
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK