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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242779 (43 seq.)
>W131051999
AMYG01000064
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
1690
1765
+
Glu
CTC
[ENA]
¡û
>W131167562
ARDJ01000012
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
20031
19956
-
Glu
CTC
[ENA]
¡û
>C025862
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
937090
937015
-
Glu
CTC
[Ensembl]
¡û
>w018987
AATV01000048
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
375
452
+
Glu
CTC
[ENA]
¡û
>w010208
AAKQ01000074
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
2230
2307
+
Glu
CTC
[ENA]
¡û
>W141092613
AVAF01000131
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
13001
13076
+
Glu
CTC
[ENA]
¡û
>WENV181226150
OFDK01000109
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
250
175
-
Glu
CTC
[ENA]
¢þ
>W141153113
AXDC01000003
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
84407
84332
-
Glu
CTC
[ENA]
¡û
>C08010965
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
2110095
2110170
+
Glu
CTC
[Ensembl]
¡û
>C08011057
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1453329
1453404
+
Glu
CTC
[Ensembl]
¡û
>W141276467
JADV01000004
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
8360
8435
+
Glu
CTC
[ENA]
¡û
>WENV170675645
LDZP01000175
[LDZP] terrestrial metagenome; oil reservoir sample I1
25244
25319
+
Glu
CTC
[ENA]
¢þ
>WENV170676227
LDZR01001817
[LDZR] terrestrial metagenome; oil reservoir sample K2
25357
25432
+
Glu
CTC
[ENA]
¢þ
>WENV170676902
LDZS01003120
[LDZS] terrestrial metagenome; oil reservoir sample K3
79
4
-
Glu
CTC
[ENA]
¢þ
>C191108143
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1492839
1492764
-
Glu
CTC
-
¡û
>W09133531
ACPF01000023
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
491
566
+
Glu
CTC
[ENA]
¡û
>W09134145
ACQZ01000029
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
78
3
-
Glu
CTC
[ENA]
¡û
>W09135041
ACVH01000004
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
55592
55667
+
Glu
CTC
[ENA]
¡û
>W09135148
ACVK01000005
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
15018
14943
-
Glu
CTC
[ENA]
¡û
>W09135840
ACXP01000003
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
12997
13072
+
Glu
CTC
[ENA]
¡û
>C151045336
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
916032
915957
-
Glu
CTC
[Ensembl]
¡û
>W10105938
ACXY01000021
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
25573
25648
+
Glu
CTC
[ENA]
¡û
>W10120498
ADXD01000044
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
4352
4427
+
Glu
CTC
[ENA]
¡û
>C10113418
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
930507
930432
-
Glu
CTC
[Ensembl]
¡û
>C10113477
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
947800
947725
-
Glu
CTC
[Ensembl]
¡û
>W11108261
ACXY01000021
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
25573
25648
+
Glu
CTC
[ENA]
¡û
>W1511275099
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
243596
243521
-
Glu
CTC
[ENA]
¡û
>C11122484
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1445542
1445617
+
Glu
CTC
[Ensembl]
¡û
>C11122740
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
844249
844174
-
Glu
CTC
[Ensembl]
¡û
>C11123272
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1053363
1053288
-
Glu
CTC
[Ensembl]
¡û
>W11127107
ADXD01000044
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
4352
4427
+
Glu
CTC
[ENA]
¡û
>W11152641
AEYS01000005
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
92280
92355
+
Glu
CTC
[ENA]
¡û
>W1610043690
BAZY01000049
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
8055
8130
+
Glu
CTC
[ENA]
¡û
>W121068128
AJUD01000022
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
84729
84804
+
Glu
CTC
[ENA]
¡û
>W1610612277
LGEO01000012
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
25244
25319
+
Glu
CTC
[ENA]
¡û
>W1610612629
LGEY01000009
Bacillota
Caldanaerobacter subterraneus [LGEY]
25357
25432
+
Glu
CTC
[ENA]
¡û
>W1610613198
LGFN01000224
Bacillota
Caldanaerobacter subterraneus [LGFN]
79
4
-
Glu
CTC
[ENA]
¡û
>W1710040850
BAZY01000049
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
8055
8130
+
Glu
CTC
[ENA]
¡û
>W1710515299
FNBS01000008
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
42555
42630
+
Glu
CTC
[ENA]
¡û
>W1710583323
FQUR01000015
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
79485
79410
-
Glu
CTC
[ENA]
¡û
>W1710733783
LGEO01000012
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
25244
25319
+
Glu
CTC
[ENA]
¡û
>W1710733950
LGEY01000009
Bacillota
Caldanaerobacter subterraneus [LGEY]
25357
25432
+
Glu
CTC
[ENA]
¡û
>W1710734405
LGFN01000224
Bacillota
Caldanaerobacter subterraneus [LGFN]
79
4
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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