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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242781 (45 seq.)
>W1711705115
MSQD01000012
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
7906
7831
-
Thr
TGT
[ENA]
¡û
>W131051974
AMYG01000026
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
6639
6714
+
Thr
TGT
[ENA]
¡û
>W131167593
ARDJ01000025
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
42350
42275
-
Thr
TGT
[ENA]
¡û
>C025838
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
2592882
2592807
-
Thr
TGT
[Ensembl]
¡û
>w010193
AAKQ01000018
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
19354
19429
+
Thr
TGT
[ENA]
¡û
>W141092603
AVAF01000119
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
24451
24376
-
Thr
TGT
[ENA]
¡û
>WENV181226292
OFDK01002238
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
147
222
+
Thr
TGT
[ENA]
¢þ
>W141153128
AXDC01000010
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
13774
13849
+
Thr
TGT
[ENA]
¡û
>W141193950
AYSN01000004
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
91410
91483
+
Thr
TGT
[ENA]
¡û
>W141238344
BBKT01000031
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
3370
3297
-
Thr
TGT
[ENA]
¡û
>C08010966
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
2394117
2394045
-
Thr
TGT
[Ensembl]
¡û
>C08011058
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
2313312
2313240
-
Thr
TGT
[Ensembl]
¡û
>WENV170675640
LDZP01000172
[LDZP] terrestrial metagenome; oil reservoir sample I1
31225
31300
+
Thr
TGT
[ENA]
¢þ
>WENV170676257
LDZR01001874
[LDZR] terrestrial metagenome; oil reservoir sample K2
2323
2398
+
Thr
TGT
[ENA]
¢þ
>WENV170676878
LDZS01002904
[LDZS] terrestrial metagenome; oil reservoir sample K3
6839
6764
-
Thr
TGT
[ENA]
¢þ
>C181021918
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
1124150
1124075
-
Thr
TGT
-
¡û
>W09133521
ACPF01000013
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
24876
24951
+
Thr
TGT
[ENA]
¡û
>W09135010
ACVG01000025
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
11031
11106
+
Thr
TGT
[ENA]
¡û
>W09135851
ACXP01000012
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
17212
17287
+
Thr
TGT
[ENA]
¡û
>W1910747711
MINB01000014
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
20210
20135
-
Thr
TGT
[ENA]
¡û
>W1910976731
NKHD01000029
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
72159
72234
+
Thr
TGT
[ENA]
¡û
>C151045307
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
2338736
2338661
-
Thr
TGT
[Ensembl]
¡û
>W10105934
ACXY01000016
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
22144
22219
+
Thr
TGT
[ENA]
¡û
>W10120510
ADXD01000066
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
8453
8528
+
Thr
TGT
[ENA]
¡û
>C10113833
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
2744795
2744720
-
Thr
TGT
[Ensembl]
¡û
>W11108257
ACXY01000016
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
22144
22219
+
Thr
TGT
[ENA]
¡û
>W1511275100
JOOI01000002
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
485122
485197
+
Thr
TGT
[ENA]
¡û
>C11122485
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
2295327
2295252
-
Thr
TGT
[Ensembl]
¡û
>C11122718
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
2393281
2393206
-
Thr
TGT
[Ensembl]
¡û
>C11123242
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2726197
2726122
-
Thr
TGT
[Ensembl]
¡û
>C11123320
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
2497357
2497282
-
Thr
TGT
[Ensembl]
¡û
>W11127119
ADXD01000066
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
8453
8528
+
Thr
TGT
[ENA]
¡û
>W11150449
AEVQ01000008
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
32897
32822
-
Thr
TGT
[ENA]
¡û
>W11150473
AEVQ01000061
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
512
437
-
Thr
TGT
[ENA]
¡û
>C121007658
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
538028
537955
-
Thr
TGT
[Ensembl]
¡û
>W121068099
AJUD01000008
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
216622
216547
-
Thr
TGT
[ENA]
¡û
>C131001921
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
2746497
2746422
-
Thr
TGT
[Ensembl]
¡û
>W1610612272
LGEO01000009
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
31225
31300
+
Thr
TGT
[ENA]
¡û
>W1610612659
LGEY01000066
Bacillota
Caldanaerobacter subterraneus [LGEY]
2323
2398
+
Thr
TGT
[ENA]
¡û
>W1610613174
LGFN01000008
Bacillota
Caldanaerobacter subterraneus [LGFN]
6839
6764
-
Thr
TGT
[ENA]
¡û
>W1710515301
FNBS01000011
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
5344
5419
+
Thr
TGT
[ENA]
¡û
>W1710560383
FONI01000038
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
25850
25775
-
Thr
TGT
[ENA]
¡û
>W1710733778
LGEO01000009
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
31225
31300
+
Thr
TGT
[ENA]
¡û
>W1710733980
LGEY01000066
Bacillota
Caldanaerobacter subterraneus [LGEY]
2323
2398
+
Thr
TGT
[ENA]
¡û
>W1710734381
LGFN01000008
Bacillota
Caldanaerobacter subterraneus [LGFN]
6839
6764
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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