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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242962 (101 seq.)
>W1710835410
LLJR01000018
Gammaproteobacteria
Citrobacter freundii [LLJR]
10090
10165
+
Lys
TTT
[ENA]
¡û
>W1710835412
LLJR01000018
Gammaproteobacteria
Citrobacter freundii [LLJR]
10420
10495
+
Lys
TTT
[ENA]
¡û
>W1711255142
LYRT01000409
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium [LYRT]
230
155
-
Lys
TTT
[ENA]
¡û
>W1711346131
MCOM01000002
Gammaproteobacteria
Citrobacter portucalensis freundii [MCOM]
79
154
+
Lys
TTT
[ENA]
¡û
>W1711346159
MCOM01000053
Gammaproteobacteria
Citrobacter portucalensis freundii [MCOM]
23408
23333
-
Lys
TTT
[ENA]
¡û
>W1711813536
MXIK01000004
Gammaproteobacteria
Salmonella enterica subsp. arizonae serovar 18:z4 [MXIK]
194784
194859
+
Lys
TTT
[ENA]
¡û
>W1711825677
MXPA01000021
Gammaproteobacteria
Salmonella enterica [MXPA]
33055
32980
-
Lys
TTT
[ENA]
¡û
>W1711914311
MZUR01000027
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Enteritidis [MZUR]
10679
10604
-
Lys
TTT
[ENA]
¡û
>W1712000742
NDXY01000008
Gammaproteobacteria
Citrobacter werkmanii [NDXY]
91391
91316
-
Lys
TTT
[ENA]
¡û
>W1712000744
NDXY01000008
Gammaproteobacteria
Citrobacter werkmanii [NDXY]
90961
90886
-
Lys
TTT
[ENA]
¡û
>W1712071502
NGRC01000001
Gammaproteobacteria
Citrobacter freundii [NGRC]
605310
605385
+
Lys
TTT
[ENA]
¡û
>W131043122
AMPE01000001
Gammaproteobacteria
Citrobacter sp. L17 [AMPE]
497029
496954
-
Lys
TTT
[ENA]
¡û
>W131043124
AMPE01000001
Gammaproteobacteria
Citrobacter sp. L17 [AMPE]
496800
496725
-
Lys
TTT
[ENA]
¡û
>W131194174
ASQL01000005
Gammaproteobacteria
Citrobacter sp. KTE32 [ASQL]
567110
567185
+
Lys
TTT
[ENA]
¡û
>W131194176
ASQL01000005
Gammaproteobacteria
Citrobacter sp. KTE32 [ASQL]
567291
567366
+
Lys
TTT
[ENA]
¡û
>W141015015
AIAZ01000332
Gammaproteobacteria
Escherichia coli C458_10 [AIAZ]
10053
10128
+
Lys
TTT
[ENA]
¡û
>WENV180448824
OBXF01000396
[OBXF] human gut metagenome; faeces
40585
40660
+
Lys
TTT
[ENA]
¢þ
>WENV182613227
OJKA01000001
[OJKA] metagenome; faeces
573922
573997
+
Lys
TTT
[ENA]
¢þ
>W141286881
JAPB01000001
Gammaproteobacteria
Citrobacter freundii UCI 31 [JAPB]
1278180
1278255
+
Lys
TTT
[ENA]
¡û
>W141286883
JAPB01000001
Gammaproteobacteria
Citrobacter freundii UCI 31 [JAPB]
1278598
1278673
+
Lys
TTT
[ENA]
¡û
>W141291887
JATT01000044
Gammaproteobacteria
Citrobacter freundii RLS1 [JATT]
141622
141547
-
Lys
TTT
[ENA]
¡û
>W141291890
JATT01000045
Gammaproteobacteria
Citrobacter freundii RLS1 [JATT]
142
67
-
Lys
TTT
[ENA]
¡û
>WENV183237038
OLQY01000001
[OLQY] human gut metagenome; faeces
164090
164015
-
Lys
TTT
[ENA]
¢þ
>WENV183237040
OLQY01000001
[OLQY] human gut metagenome; faeces
163909
163834
-
Lys
TTT
[ENA]
¢þ
>WENV183237042
OLQY01000001
[OLQY] human gut metagenome; faeces
163576
163501
-
Lys
TTT
[ENA]
¢þ
>WENV183789136
PPYF01383687
[PPYF] human gut metagenome; stool from patient with Crohn's disease
163
88
-
Lys
TTT
[ENA]
¢þ
>WENV170023300
BCQK01209642
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
14
89
+
Lys
TTT
[ENA]
¢þ
>WENV170023302
BCQK01209642
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
221
296
+
Lys
TTT
[ENA]
¢þ
>WENV170023402
BCQK01249482
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
119
44
-
Lys
TTT
[ENA]
¢þ
>C181059700
CP022151
Gammaproteobacteria
Citrobacter freundii 705SK3 [CP022151]
3434051
3433976
-
Lys
TTT
-
¡û
>C181059702
CP022151
Gammaproteobacteria
Citrobacter freundii 705SK3 [CP022151]
3433822
3433747
-
Lys
TTT
-
¡û
>C181061444
CP022273
Gammaproteobacteria
Citrobacter freundii 18-1 [CP022273]
1592089
1592014
-
Lys
TTT
-
¡û
>C181061446
CP022273
Gammaproteobacteria
Citrobacter freundii 18-1 [CP022273]
1591759
1591684
-
Lys
TTT
-
¡û
>C181129712
CP026231
Gammaproteobacteria
Citrobacter freundii complex sp. CFNIH4 [CP026231]
892004
892079
+
Lys
TTT
-
¡û
>C181129714
CP026231
Gammaproteobacteria
Citrobacter freundii complex sp. CFNIH4 [CP026231]
892334
892409
+
Lys
TTT
-
¡û
>C181137491
CP026677
Gammaproteobacteria
Citrobacter freundii AR_0023 [CP026677]
4717335
4717260
-
Lys
TTT
-
¡û
>C181137493
CP026677
Gammaproteobacteria
Citrobacter freundii AR_0023 [CP026677]
4717106
4717031
-
Lys
TTT
-
¡û
>C181184363
CP029727
Gammaproteobacteria
Citrobacter sp. CRE-46 AR_0157 [CP029727]
4489786
4489711
-
Lys
TTT
-
¡û
>C181184365
CP029727
Gammaproteobacteria
Citrobacter sp. CRE-46 AR_0157 [CP029727]
4489456
4489381
-
Lys
TTT
-
¡û
>C181186552
CP029991
Gammaproteobacteria
Salmonella enterica subsp. arizonae serovar 63:g,z51:- SA19981204 [CP029991]
3099148
3099073
-
Lys
TTT
-
¡û
>C191110857
CP033742
Gammaproteobacteria
Citrobacter freundii FDAARGOS_550 [CP033742]
4154819
4154894
+
Lys
TTT
-
¡û
>C191110859
CP033742
Gammaproteobacteria
Citrobacter freundii FDAARGOS_550 [CP033742]
4155048
4155123
+
Lys
TTT
-
¡û
>W141714327
JMUJ01000002
Gammaproteobacteria
Citrobacter freundii MGH 56 [JMUJ]
579827
579902
+
Lys
TTT
[ENA]
¡û
>W141714329
JMUJ01000002
Gammaproteobacteria
Citrobacter freundii MGH 56 [JMUJ]
580258
580333
+
Lys
TTT
[ENA]
¡û
>W141714358
JMUJ01000023
Gammaproteobacteria
Citrobacter freundii MGH 56 [JMUJ]
81
156
+
Lys
TTT
[ENA]
¡û
>W141783757
JOQX01000015
Gammaproteobacteria
Citrobacter freundii 5-172-05_S1_C1 [JOQX]
394
319
-
Lys
TTT
[ENA]
¡û
>W141783760
JOQX01000016
Gammaproteobacteria
Citrobacter freundii 5-172-05_S1_C1 [JOQX]
72732
72657
-
Lys
TTT
[ENA]
¡û
>W1910565543
JASA01000005
Gammaproteobacteria
Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM CVM 43481 [JASA]
83868
83793
-
Lys
TTT
[ENA]
¡û
>W1910811097
MUZM01000149
Gammaproteobacteria
Yersinia pestis 2513 [MUZM]
27777
27852
+
Lys
TTT
[ENA]
¡û
>W1910811099
MUZM01000149
Gammaproteobacteria
Yersinia pestis 2513 [MUZM]
27983
28058
+
Lys
TTT
[ENA]
¡û
>W1910915091
NHYO01000001
Gammaproteobacteria
Escherichia coli 1610280016 [NHYO]
4323198
4323123
-
Lys
TTT
[ENA]
¡û
>W1910915093
NHYO01000001
Gammaproteobacteria
Escherichia coli 1610280016 [NHYO]
4323008
4322933
-
Lys
TTT
[ENA]
¡û
>W1910915103
NHYO01000001
Gammaproteobacteria
Escherichia coli 1610280016 [NHYO]
2397505
2397430
-
Lys
TTT
[ENA]
¡û
>W1911596707
PNHJ01000003
Gammaproteobacteria
Citrobacter freundii UMB1094 [PNHJ]
233356
233281
-
Lys
TTT
[ENA]
¡û
>W1911596709
PNHJ01000003
Gammaproteobacteria
Citrobacter freundii UMB1094 [PNHJ]
233022
232947
-
Lys
TTT
[ENA]
¡û
>W1810251073
PQFB01000001
Gammaproteobacteria
Citrobacter freundii 236-17-2 [PQFB]
126164
126089
-
Lys
TTT
[ENA]
¡û
>W1810251075
PQFB01000001
Gammaproteobacteria
Citrobacter freundii 236-17-2 [PQFB]
125935
125860
-
Lys
TTT
[ENA]
¡û
>W1810259736
PQLR01000001
Gammaproteobacteria
Citrobacter braakii S1283 [PQLR]
633232
633307
+
Lys
TTT
[ENA]
¡û
>W1810259738
PQLR01000001
Gammaproteobacteria
Citrobacter braakii S1283 [PQLR]
633413
633488
+
Lys
TTT
[ENA]
¡û
>W1810259740
PQLR01000001
Gammaproteobacteria
Citrobacter braakii S1283 [PQLR]
633745
633820
+
Lys
TTT
[ENA]
¡û
>W1810259894
PQLT01000001
Gammaproteobacteria
Citrobacter braakii S1281 [PQLT]
633232
633307
+
Lys
TTT
[ENA]
¡û
>W1810259896
PQLT01000001
Gammaproteobacteria
Citrobacter braakii S1281 [PQLT]
633413
633488
+
Lys
TTT
[ENA]
¡û
>W1810259898
PQLT01000001
Gammaproteobacteria
Citrobacter braakii S1281 [PQLT]
633745
633820
+
Lys
TTT
[ENA]
¡û
>W1810266625
PQVW01000003
Gammaproteobacteria
Lelliottia aquatilis 6331-17 [PQVW]
307425
307350
-
Lys
TTT
[ENA]
¡û
>W1810266626
PQVW01000003
Gammaproteobacteria
Lelliottia aquatilis 6331-17 [PQVW]
307309
307234
-
Lys
TTT
[ENA]
¡û
>W1810266649
PQVW01000010
Gammaproteobacteria
Lelliottia aquatilis 6331-17 [PQVW]
113891
113816
-
Lys
TTT
[ENA]
¡û
>W1810266805
PQWA01000014
Gammaproteobacteria
Citrobacter braakii HH1 [PQWA]
595132
595207
+
Lys
TTT
[ENA]
¡û
>W1810266807
PQWA01000014
Gammaproteobacteria
Citrobacter braakii HH1 [PQWA]
595313
595388
+
Lys
TTT
[ENA]
¡û
>W1810266809
PQWA01000014
Gammaproteobacteria
Citrobacter braakii HH1 [PQWA]
595646
595721
+
Lys
TTT
[ENA]
¡û
>W1810381752
PXLE01000025
Gammaproteobacteria
Citrobacter freundii CRE20 [PXLE]
58908
58833
-
Lys
TTT
[ENA]
¡û
>W1810785269
QRBL01000004
Gammaproteobacteria
Citrobacter freundii 1-RC-17-03941 [QRBL]
236578
236503
-
Lys
TTT
[ENA]
¡û
>W1810785285
QRBL01000019
Gammaproteobacteria
Citrobacter freundii 1-RC-17-03941 [QRBL]
85317
85242
-
Lys
TTT
[ENA]
¡û
>W1510009843
BBLC01000302
Gammaproteobacteria
Vibrio rotiferianus Oz08 [BBLC]
78
3
-
Lys
TTT
[ENA]
¡û
>W1510093552
CEGN01000031
Gammaproteobacteria
Pantoea vagans PaVv9 [CEGN]
52451
52526
+
Lys
TTT
[ENA]
¡û
>W1510100351
CEMW01000031
Gammaproteobacteria
Pantoea vagans PaVv7 [CEMW]
52451
52526
+
Lys
TTT
[ENA]
¡û
>W1510644120
CVNF01000020
Gammaproteobacteria
Pantoea ananatis S6 [CVNF]
97525
97600
+
Lys
TTT
[ENA]
¡û
>W1511537043
JZAP01000043
Gammaproteobacteria
Vibrio parahaemolyticus 08-7626 [JZAP]
284
359
+
Lys
TTT
[ENA]
¡û
>W1511587340
LBBC01000388
Gammaproteobacteria
Escherichia coli 46zs [LBBC]
132
207
+
Lys
TTT
[ENA]
¡û
>W1511632858
LDEG01000008
Gammaproteobacteria
Serratia sp. TEL [LDEG]
1843
1918
+
Lys
TTT
[ENA]
¡û
>W1511632860
LDEG01000008
Gammaproteobacteria
Serratia sp. TEL [LDEG]
2171
2246
+
Lys
TTT
[ENA]
¡û
>W1511658027
LESN01000005
Gammaproteobacteria
Citrobacter sp. MGH103 [LESN]
756628
756553
-
Lys
TTT
[ENA]
¡û
>W1511658029
LESN01000005
Gammaproteobacteria
Citrobacter sp. MGH103 [LESN]
756399
756324
-
Lys
TTT
[ENA]
¡û
>W1511658225
LESQ01000001
Gammaproteobacteria
Citrobacter sp. MGH106 [LESQ]
999664
999589
-
Lys
TTT
[ENA]
¡û
>W1511658258
LESQ01000003
Gammaproteobacteria
Citrobacter sp. MGH106 [LESQ]
154657
154582
-
Lys
TTT
[ENA]
¡û
>W1511658260
LESQ01000003
Gammaproteobacteria
Citrobacter sp. MGH106 [LESQ]
154467
154392
-
Lys
TTT
[ENA]
¡û
>W1511658262
LESQ01000003
Gammaproteobacteria
Citrobacter sp. MGH106 [LESQ]
154134
154059
-
Lys
TTT
[ENA]
¡û
>W11154217
AEZS01000025
Gammaproteobacteria
Escherichia coli 3.2608 [AEZS]
468452
468527
+
Lys
TTT
[ENA]
¡û
>W121099315
AKTT01000003
Gammaproteobacteria
Citrobacter sp. A1 [AKTT]
222305
222380
+
Lys
TTT
[ENA]
¡û
>W121099317
AKTT01000003
Gammaproteobacteria
Citrobacter sp. A1 [AKTT]
222534
222609
+
Lys
TTT
[ENA]
¡û
>W1610537018
JRST01000016
Gammaproteobacteria
Citrobacter freundii [JRST]
129671
129596
-
Lys
TTT
[ENA]
¡û
>W1610646040
LJER01000422
Gammaproteobacteria
Enterobacter asburiae [LJER]
4005
3930
-
Lys
TTT
[ENA]
¡û
>W1610646042
LJER01000422
Gammaproteobacteria
Enterobacter asburiae [LJER]
3776
3701
-
Lys
TTT
[ENA]
¡û
>W1610646123
LJER01002231
Gammaproteobacteria
Enterobacter asburiae [LJER]
532
457
-
Lys
TTT
[ENA]
¡û
>W1610646125
LJER01002231
Gammaproteobacteria
Enterobacter asburiae [LJER]
303
228
-
Lys
TTT
[ENA]
¡û
>W1610698549
LLJR01000018
Gammaproteobacteria
Citrobacter freundii [LLJR]
10090
10165
+
Lys
TTT
[ENA]
¡û
>W1610698551
LLJR01000018
Gammaproteobacteria
Citrobacter freundii [LLJR]
10420
10495
+
Lys
TTT
[ENA]
¡û
>W1730023970
LYRR01000234
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium [LYRR]
193
268
+
Lys
TTT
[ENA]
¡û
>W1730032204
MODM01000018
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Dublin [MODM]
584
509
-
Lys
TTT
[ENA]
¡û
>W1710025077
AWRE01000087
Gammaproteobacteria
Salmonella enterica subsp. arizonae serovar 18:z4 [AWRE]
83786
83711
-
Lys
TTT
[ENA]
¡û
>W1710025733
AWRN01000034
Gammaproteobacteria
Salmonella enterica subsp. arizonae serovar 18:z4 [AWRN]
259624
259699
+
Lys
TTT
[ENA]
¡û
>W1710639487
JRST01000016
Gammaproteobacteria
Citrobacter freundii [JRST]
129671
129596
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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