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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242997 (14 seq.)
>W1711414299
MGZI01000007
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_48_7 [MGZI]
5074
4999
-
Val
TAC
[ENA]
¡û
>C010028
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
2084225
2084150
-
Val
TAC
[Ensembl]
¡û
>C010129
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
1953793
1953718
-
Val
TAC
[Ensembl]
¡û
>W09100201
AAAS03000002
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
21634
21709
+
Val
TAC
[ENA]
¡û
>WENV170995201
MWWE01203853
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
114
39
-
Val
TAC
[ENA]
¢þ
>C191000638
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
1917544
1917469
-
Val
TAC
-
¡û
>C151059732
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
1588190
1588265
+
Val
TAC
[Ensembl]
¡û
>C10107471
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
1920949
1920874
-
Val
TAC
[Ensembl]
¡û
>C11109569
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
1380028
1380103
+
Val
TAC
[Ensembl]
¡û
>W1511500990
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
1307582
1307657
+
Val
TAC
[ENA]
¡û
>C161025452
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
3810621
3810696
+
Val
TAC
[Ensembl]
¡û
>C161080240
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
1759295
1759370
+
Val
TAC
-
¡û
>W121010718
AGJM01000003
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
121598
121673
+
Val
TAC
[ENA]
¡û
>W1710087157
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
383926
384001
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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