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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243022 (19 seq.)
>W1710891834
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
721
646
-
Thr
GGT
[ENA]
¡û
>W1711342432
MCHF01000002
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
170035
170110
+
Thr
GGT
[ENA]
¡û
>W131162549
AQYY01000019
Bacillota
Dehalobacter sp. FTH1 [AQYY]
25317
25242
-
Thr
GGT
[ENA]
¡û
>WENV180345904
OBLN01010541
[OBLN] sediment metagenome; sediment
627
702
+
Thr
GGT
[ENA]
¢þ
>W141088296
AUUR01000120
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
17362
17287
-
Thr
GGT
[ENA]
¡û
>W141246578
CANE01000031
Bacillota
Dehalobacter restrictus E1 [CANE]
14876
14951
+
Thr
GGT
[ENA]
¡û
>W141246660
CANF01002296
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
5353
5278
-
Thr
GGT
[ENA]
¡û
>WENV183673787
ORJL011317769
[ORJL] groundwater metagenome; groundwater
1311
1386
+
Thr
GGT
[ENA]
¢þ
>C141011746
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
1153711
1153786
+
Thr
GGT
[Ensembl]
¡û
>W1910647147
LXPC01000002
Bacillota
Dehalobacter sp. MCB1 [LXPC]
25286
25211
-
Thr
GGT
[ENA]
¡û
>W1911608714
PNXX01000013
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
23363
23438
+
Thr
GGT
[ENA]
¡û
>W1911613544
POSF01000006
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
25037
24962
-
Thr
GGT
[ENA]
¡û
>C10113242
CP002028
Bacillota
Thermincola potens JR [CP002028]
296714
296789
+
Thr
GGT
[Ensembl]
¡û
>C11120650
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2270110
2270035
-
Thr
GGT
[Ensembl]
¡û
>W1511644712
LDXJ01000036
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
22538
22613
+
Thr
GGT
[ENA]
¡û
>W1511706126
LGTE01000012
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
89104
89029
-
Thr
GGT
[ENA]
¡û
>C131008539
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2084961
2084886
-
Thr
GGT
[Ensembl]
¡û
>C131008590
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2114749
2114674
-
Thr
GGT
[Ensembl]
¡û
>W1610752199
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
721
646
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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