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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243048 (27 seq.)
>A171000884
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
280266
280191
-
Gly
TCC
-
¡û
>A171001011
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1343245
1343320
+
Gly
TCC
-
¡û
>A171001255
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
839160
839235
+
Gly
TCC
-
¡û
>A171001497
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1047870
1047795
-
Gly
TCC
-
¡û
>A171004505
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
640063
639988
-
Gly
TCC
-
¡û
>WENV180275534
OBHT01059900
[OBHT] metagenome; hydrothermal vent
174
99
-
Gly
TCC
[ENA]
¢þ
>WENV180287700
OBIL01000386
[OBIL] metagenome; hydrothermal vent
887
815
-
Gly
TCC
[ENA]
¢þ
>WENV180317148
OBKJ01030243
[OBKJ] metagenome; hydrothermal vent
180
255
+
Gly
TCC
[ENA]
¢þ
>WENV180332490
OBLD01021516
[OBLD] metagenome; water
189
117
-
Gly
TCC
[ENA]
¢þ
>WENV181206724
OFAW01003028
[OFAW] metagenome; hydrothermal vent
1146
1221
+
Gly
TCC
[ENA]
¢þ
>WENV181208674
OFBC01001422
[OFBC] metagenome; hydrothermal vent
743
668
-
Gly
TCC
[ENA]
¢þ
>WENV181213177
OFBU01017745
[OFBU] metagenome; hydrothermal vent
580
652
+
Gly
TCC
[ENA]
¢þ
>WENV181213432
OFBV01002259
[OFBV] metagenome; hydrothermal vent
434
506
+
Gly
TCC
[ENA]
¢þ
>WENV181214011
OFBW01006563
[OFBW] metagenome; hydrothermal vent
297
369
+
Gly
TCC
[ENA]
¢þ
>WENV181214740
OFBY01011458
[OFBY] metagenome; hydrothermal vent
245
317
+
Gly
TCC
[ENA]
¢þ
>WENV181215083
OFBZ01002820
[OFBZ] metagenome; hydrothermal vent
202
277
+
Gly
TCC
[ENA]
¢þ
>WENV181215459
OFCA01000467
[OFCA] metagenome; hydrothermal vent
2385
2313
-
Gly
TCC
[ENA]
¢þ
>WENV181216010
OFCB01001372
[OFCB] metagenome; hydrothermal vent
1893
1965
+
Gly
TCC
[ENA]
¢þ
>WENV181223866
OFDD01001836
[OFDD] metagenome; hydrothermal vent
432
357
-
Gly
TCC
[ENA]
¢þ
>WENV181224742
OFDG01002845
[OFDG] metagenome; hydrothermal vent
853
778
-
Gly
TCC
[ENA]
¢þ
>At0944
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
1150255
1150330
+
Gly
TCC
[Ensembl]
¡û
>W1610001129
ACQW01000022
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
10830
10755
-
Gly
TCC
[ENA]
¡û
>W1610001153
ACQY01000014
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
3964
3888
-
Gly
TCC
[ENA]
¡û
>W1610001558
ACUW01000002
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
107586
107511
-
Gly
TCC
[ENA]
¡û
>W1610001632
ADCA01000002
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
182572
182497
-
Gly
TCC
[ENA]
¡û
>W1610018094
APMM01000015
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
2390
2465
+
Gly
TCC
[ENA]
¡û
>W1610018631
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
311660
311735
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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