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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243219 (38 seq.)
>w027633
ABCJ01000002
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
78499
78576
+
Val
TAC
[ENA]
¡û
>WENV180287215
OBIK01002251
[OBIK] hydrothermal vent metagenome; sea water
480
555
+
Val
TAC
[ENA]
¢þ
>WENV180581825
OCML01003940
[OCML] metagenome; diffuse fluid
246
171
-
Val
TAC
[ENA]
¢þ
>WENV180634477
OCRB01013234
[OCRB] metagenome; diffuse fluid
237
312
+
Val
TAC
[ENA]
¢þ
>WENV180647986
OCSI01040777
[OCSI] metagenome; diffuse fluid
271
196
-
Val
TAC
[ENA]
¢þ
>W141078142
ATHP01000001
Campylobacterota
Lebetimonas sp. JH369 [ATHP]
979681
979606
-
Val
TAC
[ENA]
¡û
>W141078152
ATHP01000001
Campylobacterota
Lebetimonas sp. JH369 [ATHP]
296856
296781
-
Val
TAC
[ENA]
¡û
>W141078182
ATHQ01000001
Campylobacterota
Lebetimonas sp. JH292 [ATHQ]
917341
917266
-
Val
TAC
[ENA]
¡û
>W141078192
ATHQ01000001
Campylobacterota
Lebetimonas sp. JH292 [ATHQ]
277377
277302
-
Val
TAC
[ENA]
¡û
>W141078222
ATHR01000001
Campylobacterota
Lebetimonas sp. JS085 [ATHR]
979605
979530
-
Val
TAC
[ENA]
¡û
>W141078232
ATHR01000001
Campylobacterota
Lebetimonas sp. JS085 [ATHR]
296817
296742
-
Val
TAC
[ENA]
¡û
>W141078262
ATHS01000001
Campylobacterota
Lebetimonas sp. JS032 [ATHS]
961777
961702
-
Val
TAC
[ENA]
¡û
>W141078272
ATHS01000001
Campylobacterota
Lebetimonas sp. JS032 [ATHS]
296322
296247
-
Val
TAC
[ENA]
¡û
>W141078303
ATHT01000001
Campylobacterota
Lebetimonas sp. JS138 [ATHT]
936818
936743
-
Val
TAC
[ENA]
¡û
>W141078313
ATHT01000001
Campylobacterota
Lebetimonas sp. JS138 [ATHT]
283042
282967
-
Val
TAC
[ENA]
¡û
>W141078343
ATHU01000001
Campylobacterota
Lebetimonas sp. JS170 [ATHU]
979725
979650
-
Val
TAC
[ENA]
¡û
>W141078353
ATHU01000001
Campylobacterota
Lebetimonas sp. JS170 [ATHU]
296869
296794
-
Val
TAC
[ENA]
¡û
>WENV181209163
OFBD01009379
[OFBD] metagenome; hydrothermal vent
527
452
-
Val
TAC
[ENA]
¢þ
>WENV181209613
OFBE01014198
[OFBE] metagenome; hydrothermal vent
362
287
-
Val
TAC
[ENA]
¢þ
>WENV181209844
OFBF01003849
[OFBF] metagenome; hydrothermal vent
638
713
+
Val
TAC
[ENA]
¢þ
>WENV181211048
OFBJ01005685
[OFBJ] metagenome; hydrothermal vent
384
309
-
Val
TAC
[ENA]
¢þ
>WENV181212917
OFBU01001236
[OFBU] metagenome; hydrothermal vent
1689
1614
-
Val
TAC
[ENA]
¢þ
>WENV181213849
OFBW01001027
[OFBW] metagenome; hydrothermal vent
1635
1710
+
Val
TAC
[ENA]
¢þ
>WENV181216104
OFCB01004041
[OFCB] metagenome; hydrothermal vent
1619
1544
-
Val
TAC
[ENA]
¢þ
>WENV181224291
OFDE01006011
[OFDE] metagenome; hydrothermal vent
311
386
+
Val
TAC
[ENA]
¢þ
>WENV181225214
OFDH01015826
[OFDH] metagenome; hydrothermal vent
332
407
+
Val
TAC
[ENA]
¢þ
>WENV181226606
OFDL01013128
[OFDL] metagenome; hydrothermal vent
360
435
+
Val
TAC
[ENA]
¢þ
>WENV181228285
OFDO01007640
[OFDO] metagenome; hydrothermal vent
667
742
+
Val
TAC
[ENA]
¢þ
>C191044906
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
597853
597928
+
Val
TAC
-
¡û
>C191044934
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
403810
403735
-
Val
TAC
-
¡û
>C191051442
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
1296195
1296120
-
Val
TAC
-
¡û
>C191051449
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
634545
634470
-
Val
TAC
-
¡û
>C191177846
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
677828
677903
+
Val
TAC
-
¡û
>C191177850
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
845974
846049
+
Val
TAC
-
¡û
>W1910015333
BDME01000001
Campylobacterota
Lebetimonas natsushimae HS1857 [BDME]
300672
300597
-
Val
TAC
[ENA]
¡û
>W1910015340
BDME01000002
Campylobacterota
Lebetimonas natsushimae HS1857 [BDME]
386616
386691
+
Val
TAC
[ENA]
¡û
>C09108047
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
567614
567689
+
Val
TAC
[Ensembl]
¡û
>C09108074
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
375973
375898
-
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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