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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243220 (72 seq.)
>w027663
ABCJ01000018
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
7419
7347
-
Ala
TGC
[ENA]
¡û
>w027655
ABCJ01000006
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
118087
118162
+
Ala
TGC
[ENA]
¡û
>w027653
ABCJ01000006
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
2038
2113
+
Ala
TGC
[ENA]
¡û
>w027646
ABCJ01000005
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
2038
2113
+
Ala
TGC
[ENA]
¡û
>w027639
ABCJ01000004
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
122504
122579
+
Ala
TGC
[ENA]
¡û
>w027630
ABCJ01000002
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
70765
70840
+
Ala
TGC
[ENA]
¡û
>WENV180275301
OBHT01002163
[OBHT] metagenome; hydrothermal vent
806
731
-
Ala
TGC
[ENA]
¢þ
>WENV180275394
OBHT01021174
[OBHT] metagenome; hydrothermal vent
333
258
-
Ala
TGC
[ENA]
¢þ
>WENV180287181
OBIK01000942
[OBIK] hydrothermal vent metagenome; sea water
2179
2104
-
Ala
TGC
[ENA]
¢þ
>WENV180287902
OBIL01011916
[OBIL] metagenome; hydrothermal vent
668
743
+
Ala
TGC
[ENA]
¢þ
>WENV180299587
OBJC01046768
[OBJC] metagenome; water
184
259
+
Ala
TGC
[ENA]
¢þ
>WENV180317018
OBKJ01006353
[OBKJ] metagenome; hydrothermal vent
642
717
+
Ala
TGC
[ENA]
¢þ
>WENV180332516
OBLD01029963
[OBLD] metagenome; water
154
229
+
Ala
TGC
[ENA]
¢þ
>WENV180580991
OCMH01009668
[OCMH] metagenome; diffuse fluid
550
475
-
Ala
TGC
[ENA]
¢þ
>WENV180581798
OCML01000898
[OCML] metagenome; diffuse fluid
296
221
-
Ala
TGC
[ENA]
¢þ
>WENV180634379
OCRB01004798
[OCRB] metagenome; diffuse fluid
678
753
+
Ala
TGC
[ENA]
¢þ
>W141078146
ATHP01000001
Campylobacterota
Lebetimonas sp. JH369 [ATHP]
677497
677422
-
Ala
TGC
[ENA]
¡û
>W141078155
ATHP01000001
Campylobacterota
Lebetimonas sp. JH369 [ATHP]
207883
207808
-
Ala
TGC
[ENA]
¡û
>W141078186
ATHQ01000001
Campylobacterota
Lebetimonas sp. JH292 [ATHQ]
648251
648176
-
Ala
TGC
[ENA]
¡û
>W141078195
ATHQ01000001
Campylobacterota
Lebetimonas sp. JH292 [ATHQ]
192021
191946
-
Ala
TGC
[ENA]
¡û
>W141078226
ATHR01000001
Campylobacterota
Lebetimonas sp. JS085 [ATHR]
677418
677343
-
Ala
TGC
[ENA]
¡û
>W141078235
ATHR01000001
Campylobacterota
Lebetimonas sp. JS085 [ATHR]
207850
207775
-
Ala
TGC
[ENA]
¡û
>W141078266
ATHS01000001
Campylobacterota
Lebetimonas sp. JS032 [ATHS]
672186
672111
-
Ala
TGC
[ENA]
¡û
>W141078275
ATHS01000001
Campylobacterota
Lebetimonas sp. JS032 [ATHS]
207542
207467
-
Ala
TGC
[ENA]
¡û
>W141078307
ATHT01000001
Campylobacterota
Lebetimonas sp. JS138 [ATHT]
660742
660667
-
Ala
TGC
[ENA]
¡û
>W141078316
ATHT01000001
Campylobacterota
Lebetimonas sp. JS138 [ATHT]
194088
194013
-
Ala
TGC
[ENA]
¡û
>W141078347
ATHU01000001
Campylobacterota
Lebetimonas sp. JS170 [ATHU]
677518
677443
-
Ala
TGC
[ENA]
¡û
>W141078356
ATHU01000001
Campylobacterota
Lebetimonas sp. JS170 [ATHU]
207891
207816
-
Ala
TGC
[ENA]
¡û
>WENV181207193
OFAY01003294
[OFAY] metagenome; hydrothermal vent
1377
1302
-
Ala
TGC
[ENA]
¢þ
>WENV181207633
OFAZ01008568
[OFAZ] metagenome; hydrothermal vent
684
609
-
Ala
TGC
[ENA]
¢þ
>WENV181208293
OFBB01002693
[OFBB] metagenome; hydrothermal vent
1351
1276
-
Ala
TGC
[ENA]
¢þ
>WENV181208973
OFBD01001303
[OFBD] metagenome; hydrothermal vent
2213
2138
-
Ala
TGC
[ENA]
¢þ
>WENV181209571
OFBE01010533
[OFBE] metagenome; hydrothermal vent
558
483
-
Ala
TGC
[ENA]
¢þ
>WENV181209810
OFBF01002109
[OFBF] metagenome; hydrothermal vent
146
221
+
Ala
TGC
[ENA]
¢þ
>WENV181210025
OFBG01001491
[OFBG] metagenome; hydrothermal vent
1511
1436
-
Ala
TGC
[ENA]
¢þ
>WENV181210355
OFBH01000937
[OFBH] metagenome; hydrothermal vent
674
749
+
Ala
TGC
[ENA]
¢þ
>WENV181210785
OFBI01001885
[OFBI] metagenome; hydrothermal vent
154
79
-
Ala
TGC
[ENA]
¢þ
>WENV181210919
OFBJ01001164
[OFBJ] metagenome; hydrothermal vent
2283
2208
-
Ala
TGC
[ENA]
¢þ
>WENV181211402
OFBK01004033
[OFBK] metagenome; hydrothermal vent
218
293
+
Ala
TGC
[ENA]
¢þ
>WENV181211641
OFBL01000653
[OFBL] metagenome; hydrothermal vent
180
255
+
Ala
TGC
[ENA]
¢þ
>WENV181211998
OFBM01004014
[OFBM] metagenome; hydrothermal vent
1000
925
-
Ala
TGC
[ENA]
¢þ
>WENV181212998
OFBU01003910
[OFBU] metagenome; hydrothermal vent
1373
1298
-
Ala
TGC
[ENA]
¢þ
>WENV181213413
OFBV01001770
[OFBV] metagenome; hydrothermal vent
746
821
+
Ala
TGC
[ENA]
¢þ
>WENV181213964
OFBW01004086
[OFBW] metagenome; hydrothermal vent
245
320
+
Ala
TGC
[ENA]
¢þ
>WENV181214267
OFBX01000180
[OFBX] metagenome; hydrothermal vent
1620
1695
+
Ala
TGC
[ENA]
¢þ
>WENV181214653
OFBY01005474
[OFBY] metagenome; hydrothermal vent
245
320
+
Ala
TGC
[ENA]
¢þ
>WENV181215102
OFBZ01003565
[OFBZ] metagenome; hydrothermal vent
665
740
+
Ala
TGC
[ENA]
¢þ
>WENV181215604
OFCA01004448
[OFCA] metagenome; hydrothermal vent
245
320
+
Ala
TGC
[ENA]
¢þ
>WENV181216339
OFCB01022641
[OFCB] metagenome; hydrothermal vent
246
321
+
Ala
TGC
[ENA]
¢þ
>WENV181216470
OFCC01000301
[OFCC] metagenome; hydrothermal vent
2315
2390
+
Ala
TGC
[ENA]
¢þ
>WENV181223910
OFDD01002968
[OFDD] metagenome; hydrothermal vent
737
812
+
Ala
TGC
[ENA]
¢þ
>WENV181224777
OFDG01004113
[OFDG] metagenome; hydrothermal vent
870
795
-
Ala
TGC
[ENA]
¢þ
>WENV181224982
OFDH01000552
[OFDH] metagenome; hydrothermal vent
240
315
+
Ala
TGC
[ENA]
¢þ
>WENV181225430
OFDI01001432
[OFDI] metagenome; hydrothermal vent
615
690
+
Ala
TGC
[ENA]
¢þ
>WENV181226400
OFDL01001495
[OFDL] metagenome; hydrothermal vent
1936
1861
-
Ala
TGC
[ENA]
¢þ
>C191044894
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
145099
145174
+
Ala
TGC
-
¡û
>C191044909
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
669306
669381
+
Ala
TGC
-
¡û
>C191044923
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
1753451
1753376
-
Ala
TGC
-
¡û
>C191044925
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
1596759
1596684
-
Ala
TGC
-
¡û
>C191051414
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
128811
128886
+
Ala
TGC
-
¡û
>C191051422
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
624597
624672
+
Ala
TGC
-
¡û
>C191051431
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
1745291
1745216
-
Ala
TGC
-
¡û
>C191051433
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
1576270
1576195
-
Ala
TGC
-
¡û
>C191177837
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
354055
354130
+
Ala
TGC
-
¡û
>C191177843
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
669226
669301
+
Ala
TGC
-
¡û
>C191177867
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
30017
29942
-
Ala
TGC
-
¡û
>W1910015343
BDME01000005
Campylobacterota
Lebetimonas natsushimae HS1857 [BDME]
1894
1969
+
Ala
TGC
[ENA]
¡û
>W1910015344
BDME01000006
Campylobacterota
Lebetimonas natsushimae HS1857 [BDME]
1932
2007
+
Ala
TGC
[ENA]
¡û
>C09108035
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
141456
141531
+
Ala
TGC
[Ensembl]
¡û
>C09108050
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
643744
643819
+
Ala
TGC
[Ensembl]
¡û
>C09108064
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
1637029
1636954
-
Ala
TGC
[Ensembl]
¡û
>C09108066
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
1521807
1521732
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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