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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243231 (29 seq.)
>W1710855593
LLYX01000033
Bacillota
Christensenella hongkongensis [LLYX]
11105
11030
-
Lys
TTT
[ENA]
¡û
>W1711089658
LSZW01000063
Bacillota
Christensenella minuta [LSZW]
130323
130398
+
Lys
TTT
[ENA]
¡û
>W1711178665
LWGY01000001
Bacillota
Christensenella minuta [LWGY]
379320
379245
-
Lys
TTT
[ENA]
¡û
>W1711301984
MAIQ01000001
Bacillota
Christensenella intestinihominis AF73-05CM02 [MAIQ]
485081
485006
-
Lys
TTT
[ENA]
¡û
>W1711302027
MAIR01000001
Bacillota
Christensenella minuta [MAIR]
355144
355219
+
Lys
TTT
[ENA]
¡û
>C171130809
LT700187
Bacillota
Christensenella massiliensis Marseille-P2438 [LT700187]
1983749
1983674
-
Lys
TTT
-
¡û
>WENV180412703
OBVA01007859
[OBVA] human gut metagenome; faeces
191
116
-
Lys
TTT
[ENA]
¢þ
>W141088596
AUVG01000060
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
52000
51925
-
Lys
TTT
[ENA]
¡û
>WENV181510093
OGGQ01029420
[OGGQ] metagenome; Human gut stool
116
191
+
Lys
TTT
[ENA]
¢þ
>WENV183286659
OLSE01031764
[OLSE] human gut metagenome; faeces
915
840
-
Lys
TTT
[ENA]
¢þ
>WENV170563232
CZCB01012238
[CZCB] anaerobic digester metagenome; anaerobic digester
300
225
-
Lys
TTT
[ENA]
¢þ
>WENV170563542
CZCB01020959
[CZCB] anaerobic digester metagenome; anaerobic digester
2087
2012
-
Lys
TTT
[ENA]
¢þ
>WENV170683836
LFRM01007563
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
30498
30573
+
Lys
TTT
[ENA]
¢þ
>WENV170690270
LFRM01332987
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
44211
44136
-
Lys
TTT
[ENA]
¢þ
>WENV170690928
LFRM01371362
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
323
398
+
Lys
TTT
[ENA]
¢þ
>C191063507
CP029256
Bacillota
Christensenella minuta DSM 22607 [CP029256]
1015552
1015477
-
Lys
TTT
-
¡û
>W1511585274
LAYJ01000078
Bacillota
Christensenella hongkongensis HKU16 [LAYJ]
173851
173776
-
Lys
TTT
[ENA]
¡û
>C161076016
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
674883
674958
+
Lys
TTT
[Ensembl]
¡û
>C161076065
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
688426
688501
+
Lys
TTT
[Ensembl]
¡û
>W1610043710
BAZZ01000006
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
346
421
+
Lys
TTT
[ENA]
¡û
>C131011033
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
678203
678278
+
Lys
TTT
-
¡û
>C131011899
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
678090
678165
+
Lys
TTT
-
¡û
>W1610717974
LLYX01000033
Bacillota
Christensenella hongkongensis [LLYX]
11105
11030
-
Lys
TTT
[ENA]
¡û
>W1610924115
LSZW01000063
Bacillota
Christensenella minuta [LSZW]
130323
130398
+
Lys
TTT
[ENA]
¡û
>W1610986712
LWGY01000001
Bacillota
Christensenella minuta [LWGY]
379320
379245
-
Lys
TTT
[ENA]
¡û
>W1611052772
MAIQ01000001
Bacillota
Christensenella intestinihominis AF73-05CM02 [MAIQ]
485081
485006
-
Lys
TTT
[ENA]
¡û
>W1611052815
MAIR01000001
Bacillota
Christensenella minuta [MAIR]
355144
355219
+
Lys
TTT
[ENA]
¡û
>W1710040870
BAZZ01000006
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
346
421
+
Lys
TTT
[ENA]
¡û
>W1710588743
FQZP01000016
Bacillota
Thermoclostridium caenicola [FQZP]
46601
46526
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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