This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243275 (89 seq.)
>W1711092384
LTEB01000022
Actinomycetota
Corynebacterium simulans [LTEB]
123
48
-
Arg
CCT
[ENA]
¡û
>W1711096822
LTIB01000156
Actinomycetota
Corynebacterium sp. HMSC071F07 [LTIB]
32821
32896
+
Arg
CCT
[ENA]
¡û
>W1711106011
LTRK01000006
Actinomycetota
Corynebacterium sp. HMSC036D03 [LTRK]
149
74
-
Arg
CCT
[ENA]
¡û
>W1711106902
LTSH01000047
Actinomycetota
Corynebacterium sp. HMSC056F09 [LTSH]
39880
39807
-
Arg
CCT
[ENA]
¡û
>W1711110848
LTVX01000110
Actinomycetota
Corynebacterium sp. HMSC076D02 [LTVX]
28558
28483
-
Arg
CCT
[ENA]
¡û
>W1711185974
LWNV01000025
Actinomycetota
Corynebacterium sp. HMSC08C04 [LWNV]
318
243
-
Arg
CCT
[ENA]
¡û
>W1711186265
LWOC01000001
Actinomycetota
Corynebacterium sp. HMSC06G04 [LWOC]
225932
226007
+
Arg
CCT
[ENA]
¡û
>W1711186371
LWOE01000012
Actinomycetota
Corynebacterium sp. HMSC06D04 [LWOE]
35430
35505
+
Arg
CCT
[ENA]
¡û
>W1711186435
LWOF01000037
Actinomycetota
Corynebacterium sp. HMSC06C06 [LWOF]
117672
117747
+
Arg
CCT
[ENA]
¡û
>W1711187704
LWPR01000059
Actinomycetota
Corynebacterium sp. HMSC04H06 [LWPR]
37730
37657
-
Arg
CCT
[ENA]
¡û
>W1711281867
LZMN01000054
Actinomycetota
Corynebacterium sp. EPI-003-04-2554_SCH2473622 [LZMN]
149248
149321
+
Arg
CCT
[ENA]
¡û
>W1711507554
MKXT01000037
Actinomycetota
Corynebacterium sp. S5S1 [MKXT]
16190
16265
+
Arg
CCT
[ENA]
¡û
>W1711511708
MLCQ01000022
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
317
242
-
Arg
CCT
[ENA]
¡û
>W1712077710
NGUZ01000018
Actinomycetota
Corynebacterium kefirresidentii OG2 [NGUZ]
31043
30968
-
Arg
CCT
[ENA]
¡û
>C171064723
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
1609865
1609940
+
Arg
CCT
-
¡û
>WENV180228576
OBCD01000269
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
16146
16221
+
Arg
CCT
[ENA]
¢þ
>WENV180312898
OBJZ01001741
[OBJZ] human gut metagenome; fecal sample
965
892
-
Arg
CCT
[ENA]
¢þ
>WENV180554413
OCJN01000462
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
3443
3368
-
Arg
CCT
[ENA]
¢þ
>WENV180766283
ODIE01001587
[ODIE] human metagenome; G_DNA_Anterior nares
34
107
+
Arg
CCT
[ENA]
¢þ
>WENV180836565
ODKF01001394
[ODKF] human metagenome; G_DNA_Anterior nares
793
866
+
Arg
CCT
[ENA]
¢þ
>WENV180878918
ODLY01002831
[ODLY] human metagenome; G_DNA_Anterior nares
456
529
+
Arg
CCT
[ENA]
¢þ
>WENV180913545
ODSU01016881
[ODSU] human metagenome; G_DNA_Anterior nares
143
218
+
Arg
CCT
[ENA]
¢þ
>WENV180937543
ODTW01007470
[ODTW] human metagenome; G_DNA_Anterior nares
7
80
+
Arg
CCT
[ENA]
¢þ
>WENV180967008
ODUS01002893
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
855
782
-
Arg
CCT
[ENA]
¢þ
>W141096252
AVFF01000012
Actinomycetota
Corynebacterium pseudodiphtheriticum 90104 [AVFF]
36750
36823
+
Arg
CCT
[ENA]
¡û
>WENV180989532
ODVM01000722
[ODVM] human metagenome; G_DNA_Anterior nares
1162
1235
+
Arg
CCT
[ENA]
¢þ
>WENV181000252
ODVU01000795
[ODVU] human metagenome; G_DNA_Anterior nares
1141
1216
+
Arg
CCT
[ENA]
¢þ
>WENV181030354
ODXG01003066
[ODXG] human metagenome; G_DNA_Anterior nares
19
92
+
Arg
CCT
[ENA]
¢þ
>WENV181032243
ODXL01001027
[ODXL] human metagenome; G_DNA_Anterior nares
775
848
+
Arg
CCT
[ENA]
¢þ
>WENV181131519
OEGC01001445
[OEGC] human metagenome; G_DNA_Anterior nares
6
79
+
Arg
CCT
[ENA]
¢þ
>WENV181131708
OEGD01005386
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
633
706
+
Arg
CCT
[ENA]
¢þ
>WENV181212240
OFBN01000601
[OFBN] metagenome; hydrothermal vent
1924
1999
+
Arg
CCT
[ENA]
¢þ
>WENV181212562
OFBR01000962
[OFBR] metagenome; hydrothermal vent
122
47
-
Arg
CCT
[ENA]
¢þ
>WENV181212654
OFBS01002441
[OFBS] metagenome; hydrothermal vent
508
583
+
Arg
CCT
[ENA]
¢þ
>WENV181212684
OFBT01000145
[OFBT] metagenome; hydrothermal vent
130
55
-
Arg
CCT
[ENA]
¢þ
>W141155041
AXLQ01000004
Actinomycetota
Corynebacterium sp. KPL1995 [AXLQ]
740632
740705
+
Arg
CCT
[ENA]
¡û
>W141155093
AXLR01000006
Actinomycetota
Corynebacterium sp. KPL1989 [AXLR]
28368
28295
-
Arg
CCT
[ENA]
¡û
>W141155190
AXLT01000007
Actinomycetota
Corynebacterium sp. KPL1860 [AXLT]
426221
426296
+
Arg
CCT
[ENA]
¡û
>W141155288
AXLV01000005
Actinomycetota
Corynebacterium sp. KPL1857 [AXLV]
935255
935330
+
Arg
CCT
[ENA]
¡û
>W141155327
AXLW01000006
Actinomycetota
Corynebacterium sp. KPL1856 [AXLW]
31554
31479
-
Arg
CCT
[ENA]
¡û
>W141155497
AXLZ01000013
Actinomycetota
Corynebacterium sp. KPL1821 [AXLZ]
36504
36429
-
Arg
CCT
[ENA]
¡û
>W141155592
AXMB01000007
Actinomycetota
Corynebacterium sp. KPL1817 [AXMB]
32421
32346
-
Arg
CCT
[ENA]
¡û
>WENV182629332
OJKS01000068
[OJKS] metagenome; surface
3302
3227
-
Arg
CCT
[ENA]
¢þ
>WENV182629599
OJKT01003095
[OJKT] metagenome; surface
76
149
+
Arg
CCT
[ENA]
¢þ
>WENV182629861
OJKV01000177
[OJKV] metagenome; surface
4378
4451
+
Arg
CCT
[ENA]
¢þ
>WENV182636486
OJKZ01009388
[OJKZ] metagenome; surface
624
549
-
Arg
CCT
[ENA]
¢þ
>WENV182640424
OJLB01010478
[OJLB] metagenome; surface
130
55
-
Arg
CCT
[ENA]
¢þ
>WENV182640857
OJLE01000072
[OJLE] metagenome; surface
39047
39120
+
Arg
CCT
[ENA]
¢þ
>WENV182642153
OJLL01002250
[OJLL] metagenome; surface
122
47
-
Arg
CCT
[ENA]
¢þ
>WENV182643174
OJLS01002720
[OJLS] metagenome; surface
1043
968
-
Arg
CCT
[ENA]
¢þ
>WENV182643460
OJLU01019613
[OJLU] metagenome; surface
74
1
-
Arg
CCT
[ENA]
¢þ
>WENV182643991
OJLW01004580
[OJLW] metagenome; surface
3469
3544
+
Arg
CCT
[ENA]
¢þ
>WENV182645545
OJLY01048661
[OJLY] metagenome; surface
533
458
-
Arg
CCT
[ENA]
¢þ
>WENV182645930
OJLZ01010443
[OJLZ] metagenome; surface
1451
1524
+
Arg
CCT
[ENA]
¢þ
>WENV182646226
OJMA01000354
[OJMA] metagenome; surface
5481
5554
+
Arg
CCT
[ENA]
¢þ
>WENV182646562
OJMB01140337
[OJMB] metagenome; surface
89
17
-
Arg
CCT
[ENA]
¢þ
>WENV182646575
OJMC01000004
[OJMC] metagenome; surface
94148
94221
+
Arg
CCT
[ENA]
¢þ
>WENV182671796
OJNM01002966
[OJNM] metagenome; surface
1877
1804
-
Arg
CCT
[ENA]
¢þ
>WENV182803934
OJUR01000309
[OJUR] human gut metagenome; human gut
339
412
+
Arg
CCT
[ENA]
¢þ
>WENV182811978
OJXO01000044
[OJXO] human gut metagenome; human gut
498
423
-
Arg
CCT
[ENA]
¢þ
>WENV182818932
OJZZ01002160
[OJZZ] human gut metagenome; human gut
464
537
+
Arg
CCT
[ENA]
¢þ
>WENV182829141
OKDM01000161
[OKDM] human gut metagenome; human gut
122
47
-
Arg
CCT
[ENA]
¢þ
>WENV182833956
OKEX01000069
[OKEX] human gut metagenome; human gut
130
55
-
Arg
CCT
[ENA]
¢þ
>WENV182834012
OKEY01000147
[OKEY] human gut metagenome; human gut
131
56
-
Arg
CCT
[ENA]
¢þ
>WENV182855558
OKNB01000342
[OKNB] human gut metagenome; human gut
1866
1941
+
Arg
CCT
[ENA]
¢þ
>C181108774
CP024931
Actinomycetota
Corynebacterium striatum 215 [CP024931]
1307359
1307432
+
Arg
CCT
-
¡û
>C181108871
CP024932
Actinomycetota
Corynebacterium striatum 216 [CP024932]
44836
44763
-
Arg
CCT
-
¡û
>W141563846
JIAH01000006
Actinomycetota
Corynebacterium pseudodiphtheriticum DSM 44287 [JIAH]
24560
24487
-
Arg
CCT
[ENA]
¡û
>W09135426
ACVP01000016
Actinomycetota
Corynebacterium tuberculostearicum SK141 [ACVP]
1257
1182
-
Arg
CCT
[ENA]
¡û
>W1910598684
LBCN01000049
Actinomycetota
Corynebacterium striatum 2023 [LBCN]
28428
28355
-
Arg
CCT
[ENA]
¡û
>W1911204437
NRIM01000022
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
79705
79778
+
Arg
CCT
[ENA]
¡û
>W1911204548
NRIO01000014
Actinomycetota
Corynebacterium striatum 2308 [NRIO]
176305
176232
-
Arg
CCT
[ENA]
¡û
>W1911204569
NRIO01000030
Actinomycetota
Corynebacterium striatum 2308 [NRIO]
27860
27787
-
Arg
CCT
[ENA]
¡û
>W1911390855
NWBP01000009
Actinomycetota
Corynebacterium accolens AH4003 [NWBP]
21329
21403
+
Arg
CCT
[ENA]
¡û
>W1510562538
CTEG01000006
Actinomycetota
Corynebacterium striatum BM4687 [CTEG]
25222
25147
-
Arg
CCT
[ENA]
¡û
>W1511439782
JUOH01000050
Actinomycetota
Corynebacterium aurimucosum 911_CAUR [JUOH]
26676
26751
+
Arg
CCT
[ENA]
¡û
>W1511443059
JUSN01000028
Actinomycetota
Corynebacterium striatum 797_CAUR [JUSN]
45978
46053
+
Arg
CCT
[ENA]
¡û
>W1511448424
JUZU01000034
Actinomycetota
Corynebacterium aurimucosum 620_CAUR [JUZU]
200
125
-
Arg
CCT
[ENA]
¡û
>W1511451292
JVCW01000084
Actinomycetota
Corynebacterium striatum 542_CAUR [JVCW]
27779
27704
-
Arg
CCT
[ENA]
¡û
>W1511471069
JVXO01000011
Actinomycetota
Corynebacterium aurimucosum 1237_CAUR [JVXO]
16776
16851
+
Arg
CCT
[ENA]
¡û
>W1511472660
JVZP01000060
Actinomycetota
Cutibacterium acnes 119_PAVI [JVZP]
26655
26730
+
Arg
CCT
[ENA]
¡û
>W1511473162
JWAB01001497
Actinomycetota
Corynebacterium aurimucosum 118_CAUR [JWAB]
459
384
-
Arg
CCT
[ENA]
¡û
>W1511585549
LAYR01000001
Actinomycetota
Corynebacterium striatum 1961 [LAYR]
11100
11175
+
Arg
CCT
[ENA]
¡û
>C161074773
CP014634
Actinomycetota
Corynebacterium simulans PES1 [CP014634]
590954
591029
+
Arg
CCT
[Ensembl]
¡û
>C161074831
CP014635
Actinomycetota
Corynebacterium simulans Wattiau [CP014635]
728310
728385
+
Arg
CCT
-
¡û
>W1610507476
FLTI01000020
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
148142
148067
-
Arg
CCT
[ENA]
¡û
>W1610926422
LTEB01000022
Actinomycetota
Corynebacterium simulans [LTEB]
123
48
-
Arg
CCT
[ENA]
¡û
>W1611041152
LZMN01000054
Actinomycetota
Corynebacterium sp. EPI-003-04-2554_SCH2473622 [LZMN]
149248
149321
+
Arg
CCT
[ENA]
¡û
>W1710499694
FLTI01000020
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
148142
148067
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK