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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243463 (32 seq.)
>W1710881160
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
1391397
1391470
+
Gly
GCC
[ENA]
¡û
>W1710881163
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
1462715
1462790
+
Gly
GCC
[ENA]
¡û
>W1710881209
LMSX01000008
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
1071969
1071896
-
Gly
GCC
[ENA]
¡û
>W1710881212
LMSX01000008
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
1019488
1019413
-
Gly
GCC
[ENA]
¡û
>W131159343
AQUZ01000001
Actinomycetota
Kribbella catacumbae DSM 19601 [AQUZ]
46323
46396
+
Gly
GCC
[ENA]
¡û
>W131159346
AQUZ01000001
Actinomycetota
Kribbella catacumbae DSM 19601 [AQUZ]
48474
48547
+
Gly
GCC
[ENA]
¡û
>W131168581
ARED01000007
Actinomycetota
Streptomyces sp. HmicA12 [ARED]
208483
208556
+
Gly
GCC
[ENA]
¡û
>WENV180115977
OAPT01085082
[OAPT] marine metagenome; seawater
12
87
+
Gly
GCC
[ENA]
¢þ
>WENV180309201
OBJR01675477
[OBJR] soil metagenome; soil
173
100
-
Gly
GCC
[ENA]
¢þ
>WENV180378711
OBOO01110433
[OBOO] marine metagenome; ENVO 00002150
333
258
-
Gly
GCC
[ENA]
¢þ
>WENV181167766
OEIU01071945
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
798
723
-
Gly
GCC
[ENA]
¢þ
>W141142485
AWQS01000072
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
632
559
-
Gly
GCC
[ENA]
¡û
>WENV170580265
FUFK010045263
[FUFK] metagenome; unknown
12154
12079
-
Gly
GCC
[ENA]
¢þ
>WENV170585283
FUFK010276851
[FUFK] metagenome; unknown
932
857
-
Gly
GCC
[ENA]
¢þ
>WENV170587111
FUFK010467974
[FUFK] metagenome; unknown
1826
1901
+
Gly
GCC
[ENA]
¢þ
>WENV170772850
LXNJ01000701
[LXNJ] sponge metagenome; marine sponge reef
18659
18586
-
Gly
GCC
[ENA]
¢þ
>WENV170845517
MDTA01025354
[MDTA] marine metagenome; seawater
2215
2140
-
Gly
GCC
[ENA]
¢þ
>WENV170883823
MDTC01173212
[MDTC] marine metagenome; seawater
3592
3667
+
Gly
GCC
[ENA]
¢þ
>C181185145
CP029788
Actinomycetota
Streptomyces actuosus ATCC 25421 [CP029788]
4002117
4002192
+
Gly
GCC
-
¡û
>W141564785
JIBA01000013
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
119831
119904
+
Gly
GCC
[ENA]
¡û
>W141564788
JIBA01000013
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
223385
223460
+
Gly
GCC
[ENA]
¡û
>W1810592368
QFXK01000026
Actinomycetota
Kribbella monticola NEAU-SW521 [QFXK]
130785
130858
+
Gly
GCC
[ENA]
¡û
>W1810694315
QLLY01000011
Actinomycetota
Streptomyces sp. PsTaAH-137 [QLLY]
189247
189320
+
Gly
GCC
[ENA]
¡û
>W1810694335
QLLY01000021
Actinomycetota
Streptomyces sp. PsTaAH-137 [QLLY]
35910
35835
-
Gly
GCC
[ENA]
¡û
>C10107954
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
3596933
3597006
+
Gly
GCC
[Ensembl]
¡û
>C10107976
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
3578891
3578818
-
Gly
GCC
[Ensembl]
¡û
>C11111438
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
2135193
2135120
-
Gly
GCC
[Ensembl]
¡û
>C11111441
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
2134868
2134793
-
Gly
GCC
[Ensembl]
¡û
>W1610743506
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
1391397
1391470
+
Gly
GCC
[ENA]
¡û
>W1610743509
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
1462715
1462790
+
Gly
GCC
[ENA]
¡û
>W1610743555
LMSX01000008
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
1071969
1071896
-
Gly
GCC
[ENA]
¡û
>W1610743558
LMSX01000008
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
1019488
1019413
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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