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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24348 (63 seq.)
>W1711116588
LUCI01000102
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
53881
53970
+
Ser
CGA
[ENA]
¡û
>W1711116598
LUCJ01000011
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
45631
45720
+
Ser
CGA
[ENA]
¡û
>W1711466174
MJMD01000014
Alphaproteobacteria
Novacetimonas hansenii [MJMD]
45763
45852
+
Ser
CGA
[ENA]
¡û
>W1711466235
MJME01000047
Alphaproteobacteria
Novacetimonas hansenii [MJME]
85109
85020
-
Ser
CGA
[ENA]
¡û
>W1711466273
MJMF01000029
Alphaproteobacteria
Novacetimonas hansenii [MJMF]
27694
27605
-
Ser
CGA
[ENA]
¡û
>C171100660
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
733332
733243
-
Ser
CGA
-
¡û
>WENV180344035
OBLK01193204
[OBLK] soil metagenome; Clay
270
181
-
Ser
CGA
[ENA]
¢þ
>WENV180376179
OBOL01258252
[OBOL] marine metagenome; Surface water
253
164
-
Ser
CGA
[ENA]
¢þ
>WENV181292445
OFHE01014484
[OFHE] soil metagenome; Clay
204
115
-
Ser
CGA
[ENA]
¢þ
>W141224592
BAIO01000033
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
2785
2874
+
Ser
CGA
[ENA]
¡û
>W141401982
JDTI01000082
Alphaproteobacteria
Komagataeibacter rhaeticus AF1 [JDTI]
49115
49204
+
Ser
CGA
[ENA]
¡û
>C181103423
CP024644
Alphaproteobacteria
Komagataeibacter xylinus CGMCC 2955 [CP024644]
1196344
1196433
+
Ser
CGA
-
¡û
>C191023963
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
2264445
2264534
+
Ser
CGA
-
¡û
>C191150990
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
1092655
1092566
-
Ser
CGA
-
¡û
>W1910015198
BDLU01000030
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
16813
16724
-
Ser
CGA
[ENA]
¡û
>W1910015253
BDLW01000013
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
182956
182867
-
Ser
CGA
[ENA]
¡û
>W1910183229
BJNN01000116
Alphaproteobacteria
Novacetimonas hansenii NBRC 14820 [BJNN]
17724
17635
-
Ser
CGA
[ENA]
¡û
>W1910694754
MDTO01000331
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
6018
5929
-
Ser
CGA
[ENA]
¡û
>W1910695611
MDVY01000207
Alphaproteobacteria
Novacetimonas hansenii ATCC 53582 [MDVY]
4635
4546
-
Ser
CGA
[ENA]
¡û
>W1910695662
MDVZ01000273
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
5937
5848
-
Ser
CGA
[ENA]
¡û
>W1910929258
NIRT01000022
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
10085
9996
-
Ser
CGA
[ENA]
¡û
>W1910972001
NKCY01000001
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
447957
448046
+
Ser
CGA
[ENA]
¡û
>W1910990440
NKTX01000014
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
44186
44275
+
Ser
CGA
[ENA]
¡û
>W1910990493
NKTY01000017
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
18276
18187
-
Ser
CGA
[ENA]
¡û
>W1910990549
NKTZ01000017
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
18415
18326
-
Ser
CGA
[ENA]
¡û
>W1910990587
NKUA01000010
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
74253
74164
-
Ser
CGA
[ENA]
¡û
>W1910990643
NKUB01000029
Alphaproteobacteria
Komagataeibacter swingsii LMG 22125 [NKUB]
3556
3645
+
Ser
CGA
[ENA]
¡û
>W1910990691
NKUC01000035
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
19586
19497
-
Ser
CGA
[ENA]
¡û
>W1910990726
NKUD01000009
Alphaproteobacteria
Novacetimonas hansenii LMG 23726 [NKUD]
81191
81102
-
Ser
CGA
[ENA]
¡û
>W1910990760
NKUE01000002
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [NKUE]
136222
136133
-
Ser
CGA
[ENA]
¡û
>W1910990830
NKUF01000019
Alphaproteobacteria
Gluconacetobacter entanii LTH 4560 [NKUF]
23269
23180
-
Ser
CGA
[ENA]
¡û
>W1911138376
NOXG01000001
Alphaproteobacteria
Novacetimonas pomaceti T5K1 [NOXG]
404073
404162
+
Ser
CGA
[ENA]
¡û
>W1911717678
QQBI01000003
Alphaproteobacteria
Komagataeibacter xylinus K2G30 [QQBI]
23056
22967
-
Ser
CGA
[ENA]
¡û
>W1810223493
POTC01000014
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [POTC]
63483
63394
-
Ser
CGA
[ENA]
¡û
>W1810268388
PRCW01000060
Alphaproteobacteria
Novacetimonas pomaceti AV446 [PRCW]
22125
22036
-
Ser
CGA
[ENA]
¡û
>W1810583861
QEXL01000021
Alphaproteobacteria
Novacetimonas cocois WE7 [QEXL]
27305
27394
+
Ser
CGA
[ENA]
¡û
>W1810894191
QUWV01000142
Alphaproteobacteria
Komagataeibacter melaceti AV 382 [QUWV]
66
155
+
Ser
CGA
[ENA]
¡û
>C151006059
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
2104158
2104069
-
Ser
CGA
[Ensembl]
¡û
>W1510011594
BBMU01000268
Alphaproteobacteria
Acetobacter tropicalis NBRC 16470 [BBMU]
36620
36709
+
Ser
CGA
[ENA]
¡û
>W10117687
ADTV01000043
Alphaproteobacteria
Novacetimonas hansenii ATCC 23769 [ADTV]
17724
17635
-
Ser
CGA
[ENA]
¡û
>C11110005
AP012159
Alphaproteobacteria
Komagataeibacter medellinensis NBRC 3288 [AP012159]
927765
927676
-
Ser
CGA
[Ensembl]
¡û
>W11122676
ADTV01000043
Alphaproteobacteria
Novacetimonas hansenii ATCC 23769 [ADTV]
17724
17635
-
Ser
CGA
[ENA]
¡û
>W1511431871
JUFX01000091
Alphaproteobacteria
Komagataeibacter intermedius AF2 [JUFX]
20060
19971
-
Ser
CGA
[ENA]
¡û
>W11157699
AFCH01000058
Alphaproteobacteria
Gluconacetobacter sp. SXCC-1 [AFCH]
27083
27172
+
Ser
CGA
[ENA]
¡û
>W11186840
CADR01000017
Alphaproteobacteria
Komagataeibacter europaeus LMG 18494 [CADR]
43989
44078
+
Ser
CGA
[ENA]
¡û
>W11186896
CADS01000018
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
7196
7107
-
Ser
CGA
[ENA]
¡û
>W11186934
CADT01000001
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
247744
247833
+
Ser
CGA
[ENA]
¡û
>W1610041101
BANE01000215
Alphaproteobacteria
Novacetimonas hansenii JCM 7643 [BANE]
17768
17679
-
Ser
CGA
[ENA]
¡û
>W1610041127
BANF01000033
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
27294
27383
+
Ser
CGA
[ENA]
¡û
>W1610041250
BANI01000029
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
46919
46830
-
Ser
CGA
[ENA]
¡û
>W1610041297
BANJ01000013
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
10138
10227
+
Ser
CGA
[ENA]
¡û
>W1610070902
BCTP01000041
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
6594
6683
+
Ser
CGA
[ENA]
¡û
>W1610187991
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
1670473
1670384
-
Ser
CGA
[ENA]
¡û
>W1610624713
LHZQ01000194
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
36641
36730
+
Ser
CGA
[ENA]
¡û
>W1610927947
LUCI01000102
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
53881
53970
+
Ser
CGA
[ENA]
¡û
>W1610927957
LUCJ01000011
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
45631
45720
+
Ser
CGA
[ENA]
¡û
>W1710038299
BANE01000215
Alphaproteobacteria
Novacetimonas hansenii JCM 7643 [BANE]
17768
17679
-
Ser
CGA
[ENA]
¡û
>W1710038325
BANF01000033
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
27294
27383
+
Ser
CGA
[ENA]
¡û
>W1710038448
BANI01000029
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
46919
46830
-
Ser
CGA
[ENA]
¡û
>W1710038495
BANJ01000013
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
10138
10227
+
Ser
CGA
[ENA]
¡û
>W1710068224
BCTP01000041
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
6594
6683
+
Ser
CGA
[ENA]
¡û
>W1710189607
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
1670473
1670384
-
Ser
CGA
[ENA]
¡û
>W1710755831
LHZQ01000194
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
36641
36730
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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