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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243559 (62 seq.)
>W1710867791
LMIO01000003
Actinomycetota
Leifsonia sp. Root227 [LMIO]
322146
322219
+
Lys
TTT
[ENA]
¡û
>W131162268
AQYK01000002
Actinomycetota
Leifsonia sp. 109 [AQYK]
786702
786777
+
Lys
TTT
[ENA]
¡û
>W131184646
ARTB01000003
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
1020685
1020610
-
Lys
TTT
[ENA]
¡û
>W131242114
CAAG010000139
Actinomycetota
Tropheryma whipplei str. Dig15 [CAAG]
5400
5327
-
Lys
TTT
[ENA]
¡û
>W131242156
CAAH010000139
Actinomycetota
Tropheryma whipplei str. Endo32 [CAAH]
5400
5327
-
Lys
TTT
[ENA]
¡û
>W131242197
CAAO010000153
Actinomycetota
Tropheryma whipplei str. Slow2 [CAAO]
5399
5326
-
Lys
TTT
[ENA]
¡û
>W131249910
CAUD01000136
Actinomycetota
Tropheryma whipplei str. Neuro1 [CAUD]
5400
5327
-
Lys
TTT
[ENA]
¡û
>W131249994
CAUF01000140
Actinomycetota
Tropheryma whipplei str. Art1 [CAUF]
5401
5328
-
Lys
TTT
[ENA]
¡û
>W131250387
CAUP010000130
Actinomycetota
Tropheryma whipplei str. Dig7 [CAUP]
5400
5327
-
Lys
TTT
[ENA]
¡û
>W131250429
CAUQ010000116
Actinomycetota
Tropheryma whipplei str. Dig10 [CAUQ]
5398
5325
-
Lys
TTT
[ENA]
¡û
>W131250471
CAUR010000119
Actinomycetota
Tropheryma whipplei str. Neuro14 [CAUR]
5402
5329
-
Lys
TTT
[ENA]
¡û
>W131250513
CAUS010000119
Actinomycetota
Tropheryma whipplei str. Endo27 [CAUS]
5402
5329
-
Lys
TTT
[ENA]
¡û
>W131250555
CAUT010000111
Actinomycetota
Tropheryma whipplei str. Sali28 [CAUT]
5400
5327
-
Lys
TTT
[ENA]
¡û
>W131250597
CAUU010000138
Actinomycetota
Tropheryma whipplei str. Art29 [CAUU]
5400
5327
-
Lys
TTT
[ENA]
¡û
>W131250638
CAUV010000142
Actinomycetota
Tropheryma whipplei str. Pneumo30 [CAUV]
5400
5327
-
Lys
TTT
[ENA]
¡û
>W131250680
CAUW010000128
Actinomycetota
Tropheryma whipplei str. DigADP25 [CAUW]
5401
5328
-
Lys
TTT
[ENA]
¡û
>W131250722
CAUX010000119
Actinomycetota
Tropheryma whipplei str. Neuro20 [CAUX]
5399
5326
-
Lys
TTT
[ENA]
¡û
>W131250763
CAUY010000141
Actinomycetota
Tropheryma whipplei str. Dig9 [CAUY]
5399
5326
-
Lys
TTT
[ENA]
¡û
>W131250805
CAVA010000122
Actinomycetota
Tropheryma whipplei str. DigMusc17 [CAVA]
5400
5327
-
Lys
TTT
[ENA]
¡û
>W131250847
CAVB010000133
Actinomycetota
Tropheryma whipplei str. Bcu26 [CAVB]
5401
5328
-
Lys
TTT
[ENA]
¡û
>W1711461516
MJGW01000002
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
18672
18747
+
Lys
TTT
[ENA]
¡û
>W1711724729
MTQL01000006
Actinomycetota
Leifsonia sp. ALI-44-B [MTQL]
1113383
1113458
+
Lys
TTT
[ENA]
¡û
>W1711961772
NCSR01000051
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
2043
2118
+
Lys
TTT
[ENA]
¡û
>C171111610
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
1117269
1117194
-
Lys
TTT
-
¡û
>C025990
BX072543
Actinomycetota
Tropheryma whipplei [BX072543]
772216
772144
-
Lys
TTT
[Ensembl]
¡û
>C026042
AE014184
Actinomycetota
Tropheryma whipplei str. Twist [AE014184]
773586
773514
-
Lys
TTT
[Ensembl]
¡û
>WENV180016057
FSTY01000451
[FSTY] metagenome; soil
3308
3383
+
Lys
TTT
[ENA]
¢þ
>WENV180016073
FSTY01000704
[FSTY] metagenome; soil
13485
13412
-
Lys
TTT
[ENA]
¢þ
>WENV180016184
FSUF01000001
[FSUF] metagenome; soil
22
96
+
Lys
TTT
[ENA]
¢þ
>WENV180016622
FSVO01000005
[FSVO] metagenome; soil
3082
3008
-
Lys
TTT
[ENA]
¢þ
>WENV180016968
FSWJ01000079
[FSWJ] metagenome; soil
6673
6747
+
Lys
TTT
[ENA]
¢þ
>WENV180018580
FSZS01000341
[FSZS] metagenome; soil
1789
1715
-
Lys
TTT
[ENA]
¢þ
>WENV180025959
FTIR01000883
[FTIR] metagenome; soil
1826
1899
+
Lys
TTT
[ENA]
¢þ
>WENV180026048
FTIR01007598
[FTIR] metagenome; soil
30
104
+
Lys
TTT
[ENA]
¢þ
>WENV180026415
FTIT01117634
[FTIT] metagenome; soil
76
2
-
Lys
TTT
[ENA]
¢þ
>WENV180028829
FTJH01054590
[FTJH] metagenome; soil
285
211
-
Lys
TTT
[ENA]
¢þ
>W141146501
AWVQ01000193
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
1997
1924
-
Lys
TTT
[ENA]
¡û
>WENV170010646
APMI01023742
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
14
89
+
Lys
TTT
[ENA]
¢þ
>C181196597
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
3299032
3299106
+
Lys
TTT
-
¡û
>C191101015
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2084805
2084730
-
Lys
TTT
-
¡û
>C191182573
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
3178133
3178058
-
Lys
TTT
-
¡û
>W1810277514
PSTX01000012
Actinomycetota
Pseudoclavibacter sp. RFBJ5 [PSTX]
254066
253992
-
Lys
TTT
[ENA]
¡û
>W1810277566
PSTY01000020
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
253996
253922
-
Lys
TTT
[ENA]
¡û
>W1810277621
PSTZ01000009
Actinomycetota
Pseudoclavibacter sp. RFBB5 [PSTZ]
7412
7339
-
Lys
TTT
[ENA]
¡û
>W1810282028
PSXX01000002
Actinomycetota
Pseudoclavibacter sp. AY1H1 [PSXX]
351234
351160
-
Lys
TTT
[ENA]
¡û
>W1810282126
PSXZ01000009
Actinomycetota
Pseudoclavibacter sp. RFBJ3 [PSXZ]
254066
253992
-
Lys
TTT
[ENA]
¡û
>W1810282179
PSYA01000010
Actinomycetota
Pseudoclavibacter sp. RFBI5 [PSYA]
1394897
1394823
-
Lys
TTT
[ENA]
¡û
>W1810282233
PSYB01000012
Actinomycetota
Pseudoclavibacter sp. RFBI4 [PSYB]
253708
253634
-
Lys
TTT
[ENA]
¡û
>W1810282285
PSYC01000029
Actinomycetota
Pseudoclavibacter sp. RFBG4 [PSYC]
76896
76822
-
Lys
TTT
[ENA]
¡û
>C161076851
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
1363946
1364021
+
Lys
TTT
[Ensembl]
¡û
>W1610112239
CZJS01000101
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
79345
79270
-
Lys
TTT
[ENA]
¡û
>W1610112511
CZJX01000083
Actinomycetota
Kocuria varians [CZJX]
165
240
+
Lys
TTT
[ENA]
¡û
>W1610112551
CZJY01000070
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
43913
43838
-
Lys
TTT
[ENA]
¡û
>W1610730137
LMIO01000003
Actinomycetota
Leifsonia sp. Root227 [LMIO]
322146
322219
+
Lys
TTT
[ENA]
¡û
>W1710114943
CZJS01000101
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
79345
79270
-
Lys
TTT
[ENA]
¡û
>W1710115215
CZJX01000083
Actinomycetota
Kocuria varians [CZJX]
165
240
+
Lys
TTT
[ENA]
¡û
>W1710115255
CZJY01000070
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
43913
43838
-
Lys
TTT
[ENA]
¡û
>W1710568289
FOTM01000019
Actinomycetota
Leifsonia sp. CL147 [FOTM]
37320
37245
-
Lys
TTT
[ENA]
¡û
>W1710603969
FUZO01000001
Actinomycetota
Plantibacter cousiniae [FUZO]
1534640
1534567
-
Lys
TTT
[ENA]
¡û
>W1710604019
FUZP01000001
Actinomycetota
Okibacterium fritillariae [FUZP]
927613
927538
-
Lys
TTT
[ENA]
¡û
>W1710608077
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
268573
268498
-
Lys
TTT
[ENA]
¡û
>W1710609353
FXWJ01000004
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
101994
102069
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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