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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243596 (32 seq.)
>W1711139054
LVEQ01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
5774
5849
+
His
GTG
[ENA]
¡û
>W1711139154
LVES01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
5774
5849
+
His
GTG
[ENA]
¡û
>W131222030
AUAY01000017
Fusobacteriota
Leptotrichia hofstadii DSM 21651 [AUAY]
165095
165170
+
His
GTG
[ENA]
¡û
>W141054933
AOJP01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AOJP]
49142
49067
-
His
GTG
[ENA]
¡û
>WENV180831339
ODKB01103967
[ODKB] human metagenome; G_DNA_Tongue dorsum
294
219
-
His
GTG
[ENA]
¢þ
>WENV180896226
ODNI01000216
[ODNI] human metagenome; G_DNA_Tongue dorsum
20074
19999
-
His
GTG
[ENA]
¢þ
>WENV180896432
ODNI01000647
[ODNI] human metagenome; G_DNA_Tongue dorsum
1758
1833
+
His
GTG
[ENA]
¢þ
>WENV180959225
ODUM01000186
[ODUM] human metagenome; G_DNA_Tongue dorsum
34941
34866
-
His
GTG
[ENA]
¢þ
>WENV181019764
ODWU01013678
[ODWU] human metagenome; G_DNA_Supragingival plaque
2177
2102
-
His
GTG
[ENA]
¢þ
>WENV181057776
ODYL01001093
[ODYL] human metagenome; G_DNA_Tongue dorsum
5
80
+
His
GTG
[ENA]
¢þ
>WENV181113523
OEEL01036256
[OEEL] human metagenome; G_DNA_Tongue dorsum
586
511
-
His
GTG
[ENA]
¢þ
>WENV181181119
OEJU01006145
[OEJU] human metagenome; G_DNA_Supragingival plaque
115
190
+
His
GTG
[ENA]
¢þ
>W141273949
JAAC01000108
Fusobacteriota
Fusobacterium necrophorum BL [JAAC]
45648
45723
+
His
GTG
[ENA]
¡û
>W141274008
JAAE01000074
Fusobacteriota
Fusobacterium necrophorum BFTR-1 [JAAE]
4200
4125
-
His
GTG
[ENA]
¡û
>W141274103
JAAH01000172
Fusobacteriota
Fusobacterium necrophorum DJ-2 [JAAH]
5412
5337
-
His
GTG
[ENA]
¡û
>WENV183115790
OLNQ01020339
[OLNQ] human gut metagenome; faeces
1122
1197
+
His
GTG
[ENA]
¢þ
>C181161151
CP028107
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [CP028107]
339063
339138
+
His
GTG
-
¡û
>C191015339
CP018196
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1291 [CP018196]
31661
31736
+
His
GTG
-
¡û
>C191016011
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
33489
33564
+
His
GTG
-
¡û
>C191113370
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
1133219
1133144
-
His
GTG
-
¡û
>C191132390
CP034842
Fusobacteriota
Fusobacterium necrophorum subsp. necrophorum ATCC 25286 [CP034842]
423427
423502
+
His
GTG
-
¡û
>W141559455
JHWT01000015
Fusobacteriota
Fusobacterium necrophorum HUN048 [JHWT]
46503
46578
+
His
GTG
[ENA]
¡û
>W09118725
ACDG01000024
Fusobacteriota
Fusobacterium necrophorum D12 [ACDG]
5172
5247
+
His
GTG
[ENA]
¡û
>C161069085
CP014231
Fusobacteriota
Leptotrichia sp. oral taxon 847 F0260 [CP014231]
1568626
1568701
+
His
GTG
[Ensembl]
¡û
>W1610026571
AUZI01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
48100
48025
-
His
GTG
[ENA]
¡û
>W121001910
ADLZ01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [ADLZ]
48533
48458
-
His
GTG
[ENA]
¡û
>W121066984
AJSY01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme ATCC 51357 [AJSY]
4720
4645
-
His
GTG
[ENA]
¡û
>W121112301
ALKK01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme Fnf 1007 [ALKK]
3858
3933
+
His
GTG
[ENA]
¡û
>W1610950062
LVEQ01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
5774
5849
+
His
GTG
[ENA]
¡û
>W1610950162
LVES01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
5774
5849
+
His
GTG
[ENA]
¡û
>W1710022620
AUZI01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
48100
48025
-
His
GTG
[ENA]
¡û
>W1710510366
FMXX01000016
Fusobacteriota
Fusobacterium necrophorum [FMXX]
5885
5810
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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