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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243598 (66 seq.)
>W1711048724
LRPX01000069
Fusobacteriota
Fusobacterium equinum [LRPX]
68250
68175
-
Thr
GGT
[ENA]
¡û
>W1711138541
LVDY01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
386715
386640
-
Thr
GGT
[ENA]
¡û
>W1711138575
LVDZ01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
89358
89433
+
Thr
GGT
[ENA]
¡û
>W1711138646
LVEA01000031
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
155885
155810
-
Thr
GGT
[ENA]
¡û
>W1711139079
LVEQ01000004
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
164531
164456
-
Thr
GGT
[ENA]
¡û
>W1711139100
LVER01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
43654
43579
-
Thr
GGT
[ENA]
¡û
>W1711139181
LVES01000013
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
88944
89019
+
Thr
GGT
[ENA]
¡û
>W1711139226
LVET01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
101559
101634
+
Thr
GGT
[ENA]
¡û
>W1711139270
LVEU01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
1682
1607
-
Thr
GGT
[ENA]
¡û
>W1711139300
LVEV01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
88068
88143
+
Thr
GGT
[ENA]
¡û
>W1711139336
LVEW01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
117325
117400
+
Thr
GGT
[ENA]
¡û
>W1711139383
LVEX01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
27524
27599
+
Thr
GGT
[ENA]
¡û
>W1711139416
LVEY01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
89358
89433
+
Thr
GGT
[ENA]
¡û
>W1711139468
LVEZ01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
207218
207143
-
Thr
GGT
[ENA]
¡û
>W1711139514
LVFA01000017
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
197998
197923
-
Thr
GGT
[ENA]
¡û
>W1711139541
LVFB01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
89358
89433
+
Thr
GGT
[ENA]
¡û
>W1711139576
LVFC01000012
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
88068
88143
+
Thr
GGT
[ENA]
¡û
>W1711139660
LVFD01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
201169
201094
-
Thr
GGT
[ENA]
¡û
>W1711139700
LVFE01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
44536
44611
+
Thr
GGT
[ENA]
¡û
>W141054916
AOJP01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AOJP]
111064
111139
+
Thr
GGT
[ENA]
¡û
>W141273974
JAAC01000209
Fusobacteriota
Fusobacterium necrophorum BL [JAAC]
13562
13487
-
Thr
GGT
[ENA]
¡û
>W141273978
JAAD01000067
Fusobacteriota
Fusobacterium necrophorum DJ-1 [JAAD]
16662
16587
-
Thr
GGT
[ENA]
¡û
>W141274025
JAAE01000214
Fusobacteriota
Fusobacterium necrophorum BFTR-1 [JAAE]
11270
11195
-
Thr
GGT
[ENA]
¡û
>W141274050
JAAF01000196
Fusobacteriota
Fusobacterium necrophorum DAB [JAAF]
77790
77715
-
Thr
GGT
[ENA]
¡û
>W141274060
JAAG01000072
Fusobacteriota
Fusobacterium necrophorum BFTR-2 [JAAG]
2255
2330
+
Thr
GGT
[ENA]
¡û
>W141274099
JAAH01000152
Fusobacteriota
Fusobacterium necrophorum DJ-2 [JAAH]
43276
43201
-
Thr
GGT
[ENA]
¡û
>WENV182984222
OKZL01000332
[OKZL] human gut metagenome; human gut
733
658
-
Thr
GGT
[ENA]
¢þ
>WENV183017611
OLEW01001710
[OLEW] human gut metagenome; human gut
295
370
+
Thr
GGT
[ENA]
¢þ
>WENV183115756
OLNQ01018673
[OLNQ] human gut metagenome; faeces
249
174
-
Thr
GGT
[ENA]
¢þ
>C181161113
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
681110
681035
-
Thr
GGT
-
¡û
>C181161176
CP028107
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [CP028107]
734973
735048
+
Thr
GGT
-
¡û
>W09118597
ACDD01000045
Fusobacteriota
Fusobacterium gonidiaformans 3_1_5R [ACDD]
11855
11780
-
Thr
GGT
[ENA]
¡û
>W09118721
ACDG01000011
Fusobacteriota
Fusobacterium necrophorum D12 [ACDG]
11624
11549
-
Thr
GGT
[ENA]
¡û
>W09120604
ACET01000015
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [ACET]
41542
41467
-
Thr
GGT
[ENA]
¡û
>C191015387
CP018196
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1291 [CP018196]
453598
453523
-
Thr
GGT
-
¡û
>C191016058
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
474080
474005
-
Thr
GGT
-
¡û
>C191113362
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
2070842
2070767
-
Thr
GGT
-
¡û
>C191132424
CP034842
Fusobacteriota
Fusobacterium necrophorum subsp. necrophorum ATCC 25286 [CP034842]
2167527
2167602
+
Thr
GGT
-
¡û
>W141559481
JHWT01000017
Fusobacteriota
Fusobacterium necrophorum HUN048 [JHWT]
26287
26212
-
Thr
GGT
[ENA]
¡û
>W1911160130
NPNE01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_LM [NPNE]
91324
91249
-
Thr
GGT
[ENA]
¡û
>W1911160179
NPNF01000003
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_CP [NPNF]
91324
91249
-
Thr
GGT
[ENA]
¡û
>W1610026564
AUZI01000023
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
110538
110613
+
Thr
GGT
[ENA]
¡û
>W121001903
ADLZ01000005
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [ADLZ]
137711
137636
-
Thr
GGT
[ENA]
¡û
>W121066991
AJSY01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme ATCC 51357 [AJSY]
173284
173359
+
Thr
GGT
[ENA]
¡û
>W121112296
ALKK01000023
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme Fnf 1007 [ALKK]
12322
12247
-
Thr
GGT
[ENA]
¡û
>W1610889853
LRPX01000069
Fusobacteriota
Fusobacterium equinum [LRPX]
68250
68175
-
Thr
GGT
[ENA]
¡û
>W1610949581
LVDY01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
386715
386640
-
Thr
GGT
[ENA]
¡û
>W1610949615
LVDZ01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
89358
89433
+
Thr
GGT
[ENA]
¡û
>W1610949686
LVEA01000031
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
155885
155810
-
Thr
GGT
[ENA]
¡û
>W1610950087
LVEQ01000004
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
164531
164456
-
Thr
GGT
[ENA]
¡û
>W1610950108
LVER01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
43654
43579
-
Thr
GGT
[ENA]
¡û
>W1610950189
LVES01000013
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
88944
89019
+
Thr
GGT
[ENA]
¡û
>W1610950234
LVET01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
101559
101634
+
Thr
GGT
[ENA]
¡û
>W1610950278
LVEU01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
1682
1607
-
Thr
GGT
[ENA]
¡û
>W1610950308
LVEV01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
88068
88143
+
Thr
GGT
[ENA]
¡û
>W1610950344
LVEW01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
117325
117400
+
Thr
GGT
[ENA]
¡û
>W1610950391
LVEX01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
27524
27599
+
Thr
GGT
[ENA]
¡û
>W1610950424
LVEY01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
89358
89433
+
Thr
GGT
[ENA]
¡û
>W1610950476
LVEZ01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
207218
207143
-
Thr
GGT
[ENA]
¡û
>W1610950522
LVFA01000017
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
197998
197923
-
Thr
GGT
[ENA]
¡û
>W1610950549
LVFB01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
89358
89433
+
Thr
GGT
[ENA]
¡û
>W1610950584
LVFC01000012
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
88068
88143
+
Thr
GGT
[ENA]
¡û
>W1610950668
LVFD01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
201169
201094
-
Thr
GGT
[ENA]
¡û
>W1610950708
LVFE01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
44536
44611
+
Thr
GGT
[ENA]
¡û
>W1710022613
AUZI01000023
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
110538
110613
+
Thr
GGT
[ENA]
¡û
>W1710510355
FMXX01000004
Fusobacteriota
Fusobacterium necrophorum [FMXX]
97220
97145
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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