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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243641 (4 seq.)
>WENV170992959
MWWB01140046
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
252
176
-
Asn
GTT
[ENA]
¡û
>WENV170993527
MWWB01340080
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
380
304
-
Asn
GTT
[ENA]
¡û
>WENV170993653
MWWB01388625
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
97
21
-
Asn
GTT
[ENA]
¡û
>WENV170999656
MWWK01134886
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
320
394
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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