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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243675 (53 seq.)
>W131044131
AMQH01000009
Bacillota
Clostridium tunisiense TJ [AMQH]
64264
64339
+
Pro
TGG
[ENA]
¡û
>W131044150
AMQH01000018
Bacillota
Clostridium tunisiense TJ [AMQH]
19298
19223
-
Pro
TGG
[ENA]
¡û
>W131044168
AMQH01000018
Bacillota
Clostridium tunisiense TJ [AMQH]
17584
17509
-
Pro
TGG
[ENA]
¡û
>W131044171
AMQH01000019
Bacillota
Clostridium tunisiense TJ [AMQH]
131861
131936
+
Pro
TGG
[ENA]
¡û
>W131195033
ASRV01000162
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
250
175
-
Pro
TGG
[ENA]
¡û
>W141063511
APJA01000004
Bacillota
Clostridium intestinale URNW [APJA]
165816
165891
+
Pro
TGG
[ENA]
¡û
>W141063540
APJA01000022
Bacillota
Clostridium intestinale URNW [APJA]
270944
271019
+
Pro
TGG
[ENA]
¡û
>W141063961
APJS01000066
Bacillota
Clostridium tetanomorphum DSM 665 [APJS]
19931
20006
+
Pro
CGG
[ENA]
¡û
>W141082923
AUPA01000008
Bacillota
Clostridium sp. BL8 [AUPA]
459
384
-
Pro
TGG
[ENA]
¡û
>W141082939
AUPA01000060
Bacillota
Clostridium sp. BL8 [AUPA]
903
978
+
Pro
TGG
[ENA]
¡û
>W141082955
AUPA01000081
Bacillota
Clostridium sp. BL8 [AUPA]
32415
32340
-
Pro
TGG
[ENA]
¡û
>W141082982
AUPA01000174
Bacillota
Clostridium sp. BL8 [AUPA]
40652
40727
+
Pro
TGG
[ENA]
¡û
>WENV170660764
JXWU01026172
[JXWU] soil metagenome; rice field; organic control Plot
460
535
+
Pro
TGG
[ENA]
¢þ
>WENV170700014
LIDZ01000215
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
76
1
-
Pro
TGG
[ENA]
¢þ
>WENV170700035
LIDZ01000390
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
50016
49941
-
Pro
TGG
[ENA]
¢þ
>C181136105
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
666883
666958
+
Pro
TGG
-
¡û
>C181136114
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
667746
667821
+
Pro
TGG
-
¡û
>C181136123
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
668621
668696
+
Pro
TGG
-
¡û
>C181136133
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
2776528
2776603
+
Pro
TGG
-
¡û
>C191138088
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
675888
675963
+
Pro
TGG
-
¡û
>C191138099
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
677259
677334
+
Pro
TGG
-
¡û
>C191138110
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
3124386
3124461
+
Pro
TGG
-
¡û
>W141557375
JHVC01000012
Bacillota
Clostridium lundense DSM 17049 [JHVC]
41541
41616
+
Pro
CGG
[ENA]
¡û
>W141702300
JMLK01000003
Bacillota
Clostridium akagii DSM 12554 [JMLK]
140239
140314
+
Pro
TGG
[ENA]
¡û
>W141702311
JMLK01000008
Bacillota
Clostridium akagii DSM 12554 [JMLK]
23264
23339
+
Pro
TGG
[ENA]
¡û
>W141734361
JNLN01000001
Bacillota
Clostridium algidicarnis [JNLN]
1425247
1425172
-
Pro
TGG
[ENA]
¡û
>W141734386
JNLN01000001
Bacillota
Clostridium algidicarnis [JNLN]
342721
342646
-
Pro
TGG
[ENA]
¡û
>W141734397
JNLN01000001
Bacillota
Clostridium algidicarnis [JNLN]
341738
341663
-
Pro
TGG
[ENA]
¡û
>W1910501391
FYAM01000007
Bacillota
Clostridium sp. BSD9I1 [FYAM]
894
819
-
Pro
TGG
[ENA]
¡û
>W1910501414
FYAM01000011
Bacillota
Clostridium sp. BSD9I1 [FYAM]
149955
150030
+
Pro
TGG
[ENA]
¡û
>W1910501444
FYAM01000025
Bacillota
Clostridium sp. BSD9I1 [FYAM]
117100
117025
-
Pro
TGG
[ENA]
¡û
>W1911491356
OAOD01000015
Bacillota
Clostridium peptidivorans [OAOD]
66647
66572
-
Pro
TGG
[ENA]
¡û
>W1911491358
OAOD01000020
Bacillota
Clostridium peptidivorans [OAOD]
201
126
-
Pro
TGG
[ENA]
¡û
>W1911491397
OAOD01000062
Bacillota
Clostridium peptidivorans [OAOD]
201
126
-
Pro
TGG
[ENA]
¡û
>W1810295731
PTIS01000016
Bacillota
Clostridium algidicarnis DSM 15099 [PTIS]
49388
49463
+
Pro
TGG
[ENA]
¡û
>W1810295736
PTIS01000023
Bacillota
Clostridium algidicarnis DSM 15099 [PTIS]
33864
33939
+
Pro
TGG
[ENA]
¡û
>W1810367484
PVXO01000045
Bacillota
Clostridium liquoris DSM 100320 [PVXO]
10308
10383
+
Pro
CGG
[ENA]
¡û
>W1810604940
QGMU01000015
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
3125
3050
-
Pro
TGG
[ENA]
¡û
>W1510755128
CYSK01000013
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
871051
871126
+
Pro
TGG
[ENA]
¡û
>W1510755139
CYSK01000013
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
21403
21328
-
Pro
TGG
[ENA]
¡û
>W1511186999
JMFY01000008
Bacillota
Clostridium sp. HMP27 [JMFY]
77750
77675
-
Pro
TGG
[ENA]
¡û
>W1511187014
JMFY01000021
Bacillota
Clostridium sp. HMP27 [JMFY]
42016
42091
+
Pro
TGG
[ENA]
¡û
>W1511187021
JMFY01000031
Bacillota
Clostridium sp. HMP27 [JMFY]
119
194
+
Pro
TGG
[ENA]
¡û
>W1511595450
LBMX01000013
Bacillota
Clostridium sp. C8 [LBMX]
6215
6290
+
Pro
TGG
[ENA]
¡û
>W1710556580
FOKI01000003
Bacillota
Clostridium frigidicarnis [FOKI]
196839
196914
+
Pro
TGG
[ENA]
¡û
>W1710556621
FOKI01000064
Bacillota
Clostridium frigidicarnis [FOKI]
13590
13665
+
Pro
TGG
[ENA]
¡û
>W1710586960
FQXP01000010
Bacillota
Clostridium collagenovorans DSM 3089 [FQXP]
152159
152234
+
Pro
TGG
[ENA]
¡û
>W1710586961
FQXP01000012
Bacillota
Clostridium collagenovorans DSM 3089 [FQXP]
50906
50981
+
Pro
TGG
[ENA]
¡û
>W1710587149
FQXU01000006
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
8097
8022
-
Pro
TGG
[ENA]
¡û
>W1710587182
FQXU01000020
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
51818
51893
+
Pro
TGG
[ENA]
¡û
>W1710589418
FRAD01000011
Bacillota
Hathewaya proteolytica DSM 3090 [FRAD]
31359
31434
+
Pro
TGG
[ENA]
¡û
>W1710602540
FUYH01000010
Bacillota
Caloramator quimbayensis [FUYH]
17495
17570
+
Pro
TGG
[ENA]
¡û
>W1710602558
FUYH01000018
Bacillota
Caloramator quimbayensis [FUYH]
13293
13368
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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