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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24368 (44 seq.)
>W1710867627
LMIL01000001
Actinomycetota
Oerskovia sp. Root22 [LMIL]
447881
447792
-
Ser
CGA
[ENA]
¡û
>W1710868641
LMJG01000001
Actinomycetota
Oerskovia sp. Root918 [LMJG]
303639
303728
+
Ser
CGA
[ENA]
¡û
>W1710878875
LMRH01000003
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
623578
623667
+
Ser
CGA
[ENA]
¡û
>W1711033896
LRIE01000085
Actinomycetota
Oerskovia enterophila [LRIE]
119011
118922
-
Ser
CGA
[ENA]
¡û
>W1711135005
LUYL01000019
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
11849
11760
-
Ser
CGA
[ENA]
¡û
>W1711308528
MAQA01000017
Actinomycetota
Oerskovia enterophila [MAQA]
54432
54345
-
Ser
CGA
[ENA]
¡û
>C171118586
CP021383
Actinomycetota
Cellulosimicrobium cellulans PSBB019 [CP021383]
1190276
1190187
-
Ser
CGA
-
¡û
>W131182595
ARQM01000016
Actinomycetota
Promicromonospora sukumoe 327MFSha3.1 [ARQM]
70217
70304
+
Ser
CGA
[ENA]
¡û
>WENV180280282
OBHY01000001
[OBHY] human gut metagenome; Tissue from the tricuspid valve
665259
665348
+
Ser
CGA
[ENA]
¢þ
>WENV180280465
OBHZ01000002
[OBHZ] human gut metagenome; Vulva exsudate
665257
665346
+
Ser
CGA
[ENA]
¢þ
>WENV183635400
OOIV01000003
[OOIV] human gut metagenome; Biopsy of a nasal polyp
62653
62564
-
Ser
CGA
[ENA]
¢þ
>WENV183734982
PJUA01000320
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
137
48
-
Ser
CGA
[ENA]
¢þ
>WENV170961730
MLJW01000725
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
4741
4830
+
Ser
CGA
[ENA]
¢þ
>C181052419
CP021430
Actinomycetota
Cellulomonas sp. PSBB021 [CP021430]
2579673
2579584
-
Ser
CGA
-
¡û
>C191143960
CP035493
Actinomycetota
Xylanimonas protaetiae FW10M-9 [CP035493]
1438079
1438167
+
Ser
CGA
-
¡û
>C191144067
CP035495
Actinomycetota
Xylanimonas allomyrinae 2JSPR-7 [CP035495]
3140255
3140343
+
Ser
CGA
-
¡û
>W09110380
ABVC01000007
Actinomycetota
Xylanimonas cellulosilytica DSM 15894 [ABVC]
33493
33580
+
Ser
CGA
[ENA]
¡û
>W141769472
JOFV01000026
Actinomycetota
Oerskovia turbata [JOFV]
12622
12711
+
Ser
CGA
[ENA]
¡û
>W1911676425
QGTB01000115
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [QGTB]
278
191
-
Ser
CGA
[ENA]
¡û
>W1911783479
QXTH01000014
Actinomycetota
Antribacter gilvus CFH 30434 [QXTH]
36203
36115
-
Ser
CGA
[ENA]
¡û
>W1810058194
PDJG01000001
Actinomycetota
Sanguibacter antarcticus DSM 18966 [PDJG]
2461894
2461805
-
Ser
CGA
[ENA]
¡û
>W1810090089
PGFE01000003
Actinomycetota
Sediminihabitans luteus DSM 25478 [PGFE]
280841
280754
-
Ser
CGA
[ENA]
¡û
>W10100692
ABUN01000023
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
18777
18688
-
Ser
CGA
[ENA]
¡û
>W1510001148
AXCX01000099
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [AXCX]
134
47
-
Ser
CGA
[ENA]
¡û
>C10111713
CP001819
Actinomycetota
Sanguibacter keddieii DSM 10542 [CP001819]
507805
507894
+
Ser
CGA
[Ensembl]
¡û
>C10114211
CP001821
Actinomycetota
Xylanimonas cellulosilytica DSM 15894 [CP001821]
261358
261445
+
Ser
CGA
[Ensembl]
¡û
>W11100692
ABUN01000023
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
18777
18688
-
Ser
CGA
[ENA]
¡û
>W1610051371
BBGU01000523
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [BBGU]
398
311
-
Ser
CGA
[ENA]
¡û
>W1610051487
BBGW01001385
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BBGW]
321
234
-
Ser
CGA
[ENA]
¡û
>W1610068995
BCRT01000007
Actinomycetota
Sanguibacter suarezii NBRC 16159 [BCRT]
66688
66777
+
Ser
CGA
[ENA]
¡û
>W1610074056
BCWJ01000012
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BCWJ]
59949
60036
+
Ser
CGA
[ENA]
¡û
>W121126231
BAGU01001064
Actinomycetota
Promicromonosporaceae bacterium W15 [BAGU]
4491
4580
+
Ser
CGA
[ENA]
¡û
>W1610729973
LMIL01000001
Actinomycetota
Oerskovia sp. Root22 [LMIL]
447881
447792
-
Ser
CGA
[ENA]
¡û
>W1610730987
LMJG01000001
Actinomycetota
Oerskovia sp. Root918 [LMJG]
303639
303728
+
Ser
CGA
[ENA]
¡û
>W1610741221
LMRH01000003
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
623578
623667
+
Ser
CGA
[ENA]
¡û
>W1610881671
LRIE01000085
Actinomycetota
Oerskovia enterophila [LRIE]
119011
118922
-
Ser
CGA
[ENA]
¡û
>W1610946125
LUYL01000019
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
11849
11760
-
Ser
CGA
[ENA]
¡û
>W1611056187
MAQA01000017
Actinomycetota
Oerskovia enterophila [MAQA]
54432
54345
-
Ser
CGA
[ENA]
¡û
>W1710047865
BBGW01001385
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BBGW]
321
234
-
Ser
CGA
[ENA]
¡û
>W1710066368
BCRT01000007
Actinomycetota
Sanguibacter suarezii NBRC 16159 [BCRT]
66688
66777
+
Ser
CGA
[ENA]
¡û
>W1710071174
BCWJ01000012
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BCWJ]
59949
60036
+
Ser
CGA
[ENA]
¡û
>W1710510869
FMYH01000001
Actinomycetota
Sanguibacter gelidistatuariae ISLP-3 [FMYH]
31432
31343
-
Ser
CGA
[ENA]
¡û
>W1710561199
FONZ01000001
Actinomycetota
Flavimobilis marinus [FONZ]
138050
138139
+
Ser
CGA
[ENA]
¡û
>W1710596024
FTMI01000002
Actinomycetota
Cellulosimicrobium aquatile [FTMI]
698672
698761
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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