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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243840 (54 seq.)
>W1711677080
MRTG01000004
Bacillota
Paenibacillus amylolyticus [MRTG]
274179
274254
+
Lys
TTT
[ENA]
¡û
>W1711904537
MZNT01000020
Bacillota
Paenibacillus sp. 32352 [MZNT]
323
398
+
Lys
TTT
[ENA]
¡û
>C171070773
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
189942
190017
+
Lys
TTT
-
¡û
>C171070788
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
417384
417459
+
Lys
TTT
-
¡û
>C171070799
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
1523024
1523099
+
Lys
TTT
-
¡û
>C171070818
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
4870928
4870853
-
Lys
TTT
-
¡û
>C171070846
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
4225577
4225502
-
Lys
TTT
-
¡û
>C171098079
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
3481724
3481797
+
Lys
TTT
-
¡û
>C171098084
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
3703843
3703916
+
Lys
TTT
-
¡û
>C171098101
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
3051920
3051845
-
Lys
TTT
-
¡û
>C171098117
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
2941042
2940967
-
Lys
TTT
-
¡û
>W141000982
ADFW01000001
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
2149337
2149262
-
Lys
TTT
[ENA]
¡û
>W141072463
ASPU01000015
Bacillota
Paenibacillus sp. FSL H7-689 [ASPU]
865330
865255
-
Lys
TTT
[ENA]
¡û
>W141145242
AWUK01000014
Bacillota
Paenibacillus sp. MAEPY2 [AWUK]
4074
3999
-
Lys
TTT
[ENA]
¡û
>WENV183734914
PJUA01000134
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
71059
70984
-
Lys
TTT
[ENA]
¢þ
>WENV183735075
PJUA01000755
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
5772
5697
-
Lys
TTT
[ENA]
¢þ
>WENV183735132
PJUA01001177
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
6159
6084
-
Lys
TTT
[ENA]
¢þ
>WENV183735346
PJUA01014782
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
152
79
-
Lys
TTT
[ENA]
¢þ
>C191106145
CP033433
Bacillota
Cohnella candidum 18JY8-7 [CP033433]
4431162
4431237
+
Lys
TTT
-
¡û
>C191106157
CP033433
Bacillota
Cohnella candidum 18JY8-7 [CP033433]
3605441
3605366
-
Lys
TTT
-
¡û
>C191106166
CP033433
Bacillota
Cohnella candidum 18JY8-7 [CP033433]
3247783
3247708
-
Lys
TTT
-
¡û
>C141010965
CP006941
Bacillota
Paenibacillus polymyxa CR1 [CP006941]
4495601
4495526
-
Lys
TTT
-
¡û
>W1910755740
MKZL01000038
Bacillota
Paenibacillus sp. GM1FR GM1FR [MKZL]
707
779
+
Lys
TTT
[ENA]
¡û
>W1910755786
MKZL01000067
Bacillota
Paenibacillus sp. GM1FR GM1FR [MKZL]
48244
48169
-
Lys
TTT
[ENA]
¡û
>W1910755826
MKZM01000008
Bacillota
Paenibacillus sp. GM2FR GM2FR [MKZM]
4363875
4363800
-
Lys
TTT
[ENA]
¡û
>W1911495879
OBQL01000003
Bacillota
Paenibacillus sp. RU26A [OBQL]
573641
573716
+
Lys
TTT
[ENA]
¡û
>W1911495966
OBQM01000003
Bacillota
Paenibacillus sp. RU5M [OBQM]
573693
573768
+
Lys
TTT
[ENA]
¡û
>W1911671495
QGAD01000004
Bacillota
Paenibacillus sp. CFBP13512 [QGAD]
41997
42073
+
Lys
TTT
[ENA]
¡û
>W1810057122
PDHM01000022
Bacillota
Paenibacillus sp. EZ-K15 [PDHM]
50164
50089
-
Lys
TTT
[ENA]
¡û
>W1810271916
PRLG01000009
Bacillota
Paenibacillus illinoisensis E3 [PRLG]
239
314
+
Lys
TTT
[ENA]
¡û
>W1810628964
QICW01000001
Bacillota
Paenibacillus taichungensis DB-4 [QICW]
600485
600560
+
Lys
TTT
[ENA]
¡û
>W1510562419
CTED01000546
Bacillota
Paenibacillus ihuae GD6 [CTED]
13362
13290
-
Lys
TTT
[ENA]
¡û
>W1510647459
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
3233878
3233953
+
Lys
TTT
[ENA]
¡û
>W1510647487
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
3866382
3866457
+
Lys
TTT
[ENA]
¡û
>W1510647506
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
2305842
2305766
-
Lys
TTT
[ENA]
¡û
>W1510647521
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
2090844
2090769
-
Lys
TTT
[ENA]
¡û
>W1510647538
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
1964651
1964576
-
Lys
TTT
[ENA]
¡û
>W1510647549
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
1049982
1049907
-
Lys
TTT
[ENA]
¡û
>W1511499719
JXAL01000001
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
764110
764035
-
Lys
TTT
[ENA]
¡û
>W1511499729
JXAL01000010
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
16901
16826
-
Lys
TTT
[ENA]
¡û
>W1511499755
JXAL01000016
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
39056
39131
+
Lys
TTT
[ENA]
¡û
>W1511577322
LAQQ01000004
Bacillota
Paenibacillus dauci H9 [LAQQ]
17443
17368
-
Lys
TTT
[ENA]
¡û
>W1511577338
LAQQ01000011
Bacillota
Paenibacillus dauci H9 [LAQQ]
339
414
+
Lys
TTT
[ENA]
¡û
>W1511577347
LAQQ01000012
Bacillota
Paenibacillus dauci H9 [LAQQ]
134802
134727
-
Lys
TTT
[ENA]
¡û
>W1511577358
LAQQ01000017
Bacillota
Paenibacillus dauci H9 [LAQQ]
831
906
+
Lys
TTT
[ENA]
¡û
>W1610062366
BCNM01000021
Bacillota
Paenibacillus pabuli NBRC 13638 [BCNM]
130106
130031
-
Lys
TTT
[ENA]
¡û
>W1610062865
BCNV01000001
Bacillota
Paenibacillus amylolyticus [BCNV]
306975
307050
+
Lys
TTT
[ENA]
¡û
>W1610726394
LMFO01000023
Bacillota
Paenibacillus sp. Root52 [LMFO]
540104
540029
-
Lys
TTT
[ENA]
¡û
>W1610742073
LMRV01000088
Bacillota
Paenibacillus sp. Soil522 [LMRV]
153958
153883
-
Lys
TTT
[ENA]
¡û
>W1730033930
MRTT01000101
Bacillota
Paenibacillus glucanolyticus [MRTT]
539
611
+
Lys
TTT
[ENA]
¡û
>W1710059907
BCNM01000021
Bacillota
Paenibacillus pabuli NBRC 13638 [BCNM]
130106
130031
-
Lys
TTT
[ENA]
¡û
>W1710060341
BCNV01000001
Bacillota
Paenibacillus amylolyticus [BCNV]
306975
307050
+
Lys
TTT
[ENA]
¡û
>W1710597756
FTNK01000003
Bacillota
Paenibacillus macquariensis [FTNK]
166854
166929
+
Lys
TTT
[ENA]
¡û
>W1710604848
FVZJ01000003
Bacillota
Paenibacillus sp. RU5A [FVZJ]
573567
573642
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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