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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243842 (20 seq.)
>W1710892754
LNEB01000015
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
106087
106012
-
Asn
GTT
[ENA]
¡û
>W1711124472
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
1553740
1553815
+
Asn
GTT
[ENA]
¡û
>W1711124507
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
1466135
1466210
+
Asn
GTT
[ENA]
¡û
>W1711124562
LUKF01000019
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
286701
286626
-
Asn
GTT
[ENA]
¡û
>W1712010636
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
2427413
2427488
+
Asn
GTT
[ENA]
¡û
>C001960
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
88640
88715
+
Asn
GTT
[Ensembl]
¡û
>WENV181168456
OEIU01373212
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
80
155
+
Asn
GTT
[ENA]
¢þ
>WENV181837430
OGVK01042042
[OGVK] freshwater metagenome; freshwater
191
266
+
Asn
GTT
[ENA]
¢þ
>WENV170708861
LNFM01000008
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
316902
316977
+
Asn
GTT
[ENA]
¢þ
>C181047780
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
3711921
3711846
-
Asn
GTT
-
¡û
>SRA1003884
SRR002328.6935
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
51
126
+
Asn
GTT
[SRA]
>C151003350
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
82704
82779
+
Asn
GTT
[Ensembl]
¡û
>C151031131
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
2586015
2586090
+
Asn
GTT
[Ensembl]
¡û
>C151087474
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
88641
88716
+
Asn
GTT
-
¡û
>W1511399666
JTEV01000015
Bdellovibrionota
Bdellovibrio sp. ArHS [JTEV]
109557
109482
-
Asn
GTT
[ENA]
¡û
>C131001648
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
90021
90096
+
Asn
GTT
[Ensembl]
¡û
>W1610753020
LNEB01000015
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
106087
106012
-
Asn
GTT
[ENA]
¡û
>W1610935412
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
1553740
1553815
+
Asn
GTT
[ENA]
¡û
>W1610935447
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
1466135
1466210
+
Asn
GTT
[ENA]
¡û
>W1610935502
LUKF01000019
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
286701
286626
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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