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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243846 (22 seq.)
>W1710892730
LNEB01000001
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
589
514
-
Lys
TTT
[ENA]
¡û
>W1711124495
LUKD01000008
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
546828
546753
-
Lys
TTT
[ENA]
¡û
>W1711124530
LUKE01000005
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
24839
24764
-
Lys
TTT
[ENA]
¡û
>W1711124538
LUKF01000003
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
26060
26135
+
Lys
TTT
[ENA]
¡û
>W1712010626
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
292161
292236
+
Lys
TTT
[ENA]
¡û
>C001987
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
1380947
1380872
-
Lys
TTT
[Ensembl]
¡û
>WENV181172346
OEIV010614522
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
23
98
+
Lys
TTT
[ENA]
¢þ
>WENV181416568
OGCL01103590
[OGCL] hot springs metagenome; Hot spring water
322
397
+
Lys
TTT
[ENA]
¢þ
>WENV170709038
LNFM01000075
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
210856
210931
+
Lys
TTT
[ENA]
¢þ
>C181047772
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
2404243
2404318
+
Lys
TTT
-
¡û
>C191037160
CP025734
Bdellovibrionota
Bdellovibrio sp. qaytius [CP025734]
1296522
1296447
-
Lys
TTT
-
¡û
>W1910698851
MEPU01000004
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29 [MEPU]
292954
293029
+
Lys
TTT
[ENA]
¡û
>W1910698905
MEPV01000025
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_02_FULL_40_15 [MEPV]
292898
292973
+
Lys
TTT
[ENA]
¡û
>C151003375
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
1027498
1027423
-
Lys
TTT
[Ensembl]
¡û
>C151031149
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
741108
741033
-
Lys
TTT
[Ensembl]
¡û
>C151087501
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
1346652
1346577
-
Lys
TTT
-
¡û
>W1511399673
JTEV01000021
Bdellovibrionota
Bdellovibrio sp. ArHS [JTEV]
150935
151010
+
Lys
TTT
[ENA]
¡û
>C131001674
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
1535294
1535219
-
Lys
TTT
[Ensembl]
¡û
>W1610752996
LNEB01000001
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
589
514
-
Lys
TTT
[ENA]
¡û
>W1610935435
LUKD01000008
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
546828
546753
-
Lys
TTT
[ENA]
¡û
>W1610935470
LUKE01000005
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
24839
24764
-
Lys
TTT
[ENA]
¡û
>W1610935478
LUKF01000003
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
26060
26135
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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