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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243861 (31 seq.)
>C171046536
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
12817167
12817240
+
Thr
TGT
-
¡û
>WENV180029169
FTJI01107547
[FTJI] metagenome; soil
250
178
-
Thr
TGT
[ENA]
¢þ
>WENV180029196
FTJI01153505
[FTJI] metagenome; soil
799
871
+
Thr
TGT
[ENA]
¢þ
>WENV180034694
FTKR01110808
[FTKR] metagenome; soil
250
178
-
Thr
TGT
[ENA]
¢þ
>WENV180034723
FTKR01169728
[FTKR] metagenome; soil
799
871
+
Thr
TGT
[ENA]
¢þ
>WENV180035407
FTKV01000035
[FTKV] metagenome; soil
610
538
-
Thr
TGT
[ENA]
¢þ
>W141073144
ASRX01000083
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
1758
1683
-
Thr
TGT
[ENA]
¡û
>WENV181171840
OEIV010376387
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
281
356
+
Thr
TGT
[ENA]
¢þ
>C08008906
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
581065
581140
+
Thr
TGT
[Ensembl]
¡û
>C181012476
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
857804
857878
+
Thr
TGT
-
¡û
>C191010005
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
615032
615106
+
Thr
TGT
-
¡û
>C191010055
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
858900
858974
+
Thr
TGT
-
¡û
>W1610048975
BBEO01002228
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
283
358
+
Thr
TGT
[ENA]
¡û
>C131010739
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
804091
804166
+
Thr
TGT
[Ensembl]
¡û
>W1610520365
JELX01000311
Myxococcota
Sorangium cellulosum [JELX]
558
483
-
Thr
TGT
[ENA]
¡û
>W1610520431
JELY01001621
Myxococcota
Sorangium cellulosum [JELY]
777
702
-
Thr
TGT
[ENA]
¡û
>W1610520463
JELZ01000251
Myxococcota
Sorangium cellulosum [JELZ]
558
483
-
Thr
TGT
[ENA]
¡û
>W1610520532
JEMA01000712
Myxococcota
Sorangium cellulosum [JEMA]
3427
3502
+
Thr
TGT
[ENA]
¡û
>W1610520570
JEMB01001265
Myxococcota
Sorangium cellulosum [JEMB]
3505
3580
+
Thr
TGT
[ENA]
¡û
>W1610520634
JEMC01002495
Myxococcota
Sorangium cellulosum [JEMC]
359
434
+
Thr
TGT
[ENA]
¡û
>W1610520670
JEMD01001331
Myxococcota
Sorangium cellulosum [JEMD]
3734
3809
+
Thr
TGT
[ENA]
¡û
>W1610520725
JEME01001211
Myxococcota
Sorangium cellulosum [JEME]
3649
3724
+
Thr
TGT
[ENA]
¡û
>W1710045447
BBEO01002228
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
283
358
+
Thr
TGT
[ENA]
¡û
>W1710615843
JELX01000311
Myxococcota
Sorangium cellulosum [JELX]
558
483
-
Thr
TGT
[ENA]
¡û
>W1710615909
JELY01001621
Myxococcota
Sorangium cellulosum [JELY]
777
702
-
Thr
TGT
[ENA]
¡û
>W1710615941
JELZ01000251
Myxococcota
Sorangium cellulosum [JELZ]
558
483
-
Thr
TGT
[ENA]
¡û
>W1710616010
JEMA01000712
Myxococcota
Sorangium cellulosum [JEMA]
3427
3502
+
Thr
TGT
[ENA]
¡û
>W1710616048
JEMB01001265
Myxococcota
Sorangium cellulosum [JEMB]
3505
3580
+
Thr
TGT
[ENA]
¡û
>W1710616112
JEMC01002495
Myxococcota
Sorangium cellulosum [JEMC]
359
434
+
Thr
TGT
[ENA]
¡û
>W1710616148
JEMD01001331
Myxococcota
Sorangium cellulosum [JEMD]
3734
3809
+
Thr
TGT
[ENA]
¡û
>W1710616203
JEME01001211
Myxococcota
Sorangium cellulosum [JEME]
3649
3724
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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