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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243924 (12 seq.)
>W1711124469
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
317252
317327
+
Gln
TTG
[ENA]
¡û
>W1711124502
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
208966
209041
+
Gln
TTG
[ENA]
¡û
>W1711124548
LUKF01000016
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
96315
96390
+
Gln
TTG
[ENA]
¡û
>C001973
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
2712668
2712743
+
Gln
TTG
[Ensembl]
¡û
>WENV170710538
LNFM01001990
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
57477
57552
+
Gln
TTG
[ENA]
¢þ
>C181047791
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
1090308
1090233
-
Gln
TTG
-
¡û
>C151031128
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
2110980
2111055
+
Gln
TTG
[Ensembl]
¡û
>C151087487
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
2619077
2619152
+
Gln
TTG
-
¡û
>C131001660
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
2876639
2876714
+
Gln
TTG
[Ensembl]
¡û
>W1610935409
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
317252
317327
+
Gln
TTG
[ENA]
¡û
>W1610935442
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
208966
209041
+
Gln
TTG
[ENA]
¡û
>W1610935488
LUKF01000016
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
96315
96390
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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