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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243925 (19 seq.)
>W1710892750
LNEB01000015
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
308389
308464
+
Phe
GAA
[ENA]
¡û
>W1711124477
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
1359308
1359233
-
Phe
GAA
[ENA]
¡û
>W1711124513
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
1258666
1258591
-
Phe
GAA
[ENA]
¡û
>W1711124535
LUKF01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
449925
449850
-
Phe
GAA
[ENA]
¡û
>W1712010645
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
2228566
2228491
-
Phe
GAA
[ENA]
¡û
>C001974
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
3666784
3666709
-
Phe
GAA
[Ensembl]
¡û
>WENV181381268
OFRE01052977
[OFRE] wastewater metagenome; Exp Tend NO 50WW
509
434
-
Phe
GAA
[ENA]
¢þ
>WENV170708864
LNFM01000008
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
114600
114525
-
Phe
GAA
[ENA]
¢þ
>C181047759
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
141775
141850
+
Phe
GAA
-
¡û
>C151003363
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
2918738
2918663
-
Phe
GAA
[Ensembl]
¡û
>C151031141
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
2381293
2381218
-
Phe
GAA
[Ensembl]
¡û
>C151087488
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
3549864
3549789
-
Phe
GAA
-
¡û
>W1511399669
JTEV01000019
Bdellovibrionota
Bdellovibrio sp. ArHS [JTEV]
51621
51696
+
Phe
GAA
[ENA]
¡û
>C131001661
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
3880332
3880257
-
Phe
GAA
[Ensembl]
¡û
>C131004041
CP003537
Bdellovibrionota
Pseudobdellovibrio exovorus JSS [CP003537]
2536089
2536014
-
Phe
GAA
[Ensembl]
¡û
>W1610753016
LNEB01000015
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
308389
308464
+
Phe
GAA
[ENA]
¡û
>W1610935417
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
1359308
1359233
-
Phe
GAA
[ENA]
¡û
>W1610935453
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
1258666
1258591
-
Phe
GAA
[ENA]
¡û
>W1610935475
LUKF01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
449925
449850
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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