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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243928 (17 seq.)
>W1710892744
LNEB01000013
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
70823
70748
-
Trp
CCA
[ENA]
¡û
>W1711124483
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
550472
550397
-
Trp
CCA
[ENA]
¡û
>W1711124519
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
468212
468137
-
Trp
CCA
[ENA]
¡û
>W1711124553
LUKF01000016
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
291650
291575
-
Trp
CCA
[ENA]
¡û
>W1712010651
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
1534488
1534413
-
Trp
CCA
[ENA]
¡û
>C001980
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
2890262
2890187
-
Trp
CCA
[Ensembl]
¡û
>WENV170709191
LNFM01000171
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
89686
89761
+
Trp
CCA
[ENA]
¢þ
>C181047765
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
889770
889845
+
Trp
CCA
-
¡û
>C151003369
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
2326182
2326107
-
Trp
CCA
[Ensembl]
¡û
>C151031155
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
44637
44562
-
Trp
CCA
[Ensembl]
¡û
>C151087494
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
2793782
2793707
-
Trp
CCA
-
¡û
>W1511399683
JTEV01000044
Bdellovibrionota
Bdellovibrio sp. ArHS [JTEV]
819
894
+
Trp
CCA
[ENA]
¡û
>C131001667
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
3076304
3076229
-
Trp
CCA
[Ensembl]
¡û
>W1610753010
LNEB01000013
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
70823
70748
-
Trp
CCA
[ENA]
¡û
>W1610935423
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
550472
550397
-
Trp
CCA
[ENA]
¡û
>W1610935459
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
468212
468137
-
Trp
CCA
[ENA]
¡û
>W1610935493
LUKF01000016
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
291650
291575
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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