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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24403 (48 seq.)
>W1710938620
LONE02000001
Gammaproteobacteria
Stutzerimonas balearica [LONE]
30130
30041
-
Ser
TGA
[ENA]
¡û
>W1710938705
LONF02000007
Gammaproteobacteria
Stutzerimonas balearica [LONF]
30227
30138
-
Ser
TGA
[ENA]
¡û
>W1711421634
MHZH01000124
Gammaproteobacteria
Pseudomonadales bacterium GWC1_66_9 [MHZH]
5042
5131
+
Ser
TGA
[ENA]
¡û
>W1711658209
MQMM01000003
Gammaproteobacteria
Stutzerimonas degradans stutzeri [MQMM]
33289
33200
-
Ser
TGA
[ENA]
¡û
>C171044808
CP015992
Gammaproteobacteria
Pseudomonas sp. TCU-HL1 [CP015992]
2692654
2692743
+
Ser
TGA
-
¡û
>W131231119
AUIE01000048
Gammaproteobacteria
Pseudomonas resinovorans DSM 21078 [AUIE]
15343
15432
+
Ser
TGA
[ENA]
¡û
>W131046488
AMSL01000114
Gammaproteobacteria
Stutzerimonas degradans Chol1 [AMSL]
29400
29311
-
Ser
TGA
[ENA]
¡û
>W131225716
AUDU01000056
Gammaproteobacteria
Stutzerimonas azotifigens DSM 17556 [AUDU]
34800
34711
-
Ser
TGA
[ENA]
¡û
>w002054
AAAU03000001
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAAU]
875086
874995
-
Ser
TGA
[ENA]
¡û
>WENV170016258
AZIJ01018495
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
417
328
-
Ser
TGA
[ENA]
¢þ
>WENV170413746
CEUK01139462
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
587
498
-
Ser
TGA
[ENA]
¢þ
>WENV170658703
JTFP01183990
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
136
47
-
Ser
TGA
[ENA]
¢þ
>WENV170706229
LNAP01001760
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
19657
19568
-
Ser
TGA
[ENA]
¢þ
>WENV170779420
LZQO01000037
[LZQO] oil field metagenome; sample BH-FW-10 from oil reservoir
30312
30223
-
Ser
TGA
[ENA]
¢þ
>WENV170779606
LZQQ01000194
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
2672
2583
-
Ser
TGA
[ENA]
¢þ
>WENV170779608
LZQQ01000225
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
4331
4420
+
Ser
TGA
[ENA]
¢þ
>WENV170966857
MTEY01011737
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
91869
91780
-
Ser
TGA
[ENA]
¢þ
>C181011115
CP011835
Gammaproteobacteria
Azotobacter chroococcum B3 [CP011835]
2307107
2307018
-
Ser
TGA
-
¡û
>W09102092
AAHH01000001
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAHH]
875085
874996
-
Ser
TGA
[ENA]
¡û
>C191092010
CP032616
Gammaproteobacteria
Pseudomonas sp. DY-1 [CP032616]
1447106
1447017
-
Ser
TGA
-
¡û
>C191177762
CP040460
Gammaproteobacteria
Stutzerimonas degradans PheN2 [CP040460]
925324
925235
-
Ser
TGA
-
¡û
>W1910810352
MUJY01000047
Gammaproteobacteria
Pseudomonas sp. PIC25 [MUJY]
77622
77533
-
Ser
TGA
[ENA]
¡û
>W1910810784
MUNN01000129
Gammaproteobacteria
Pseudomonas indica PIC105 [MUNN]
74221
74310
+
Ser
TGA
[ENA]
¡û
>C09100889
CP001157
Gammaproteobacteria
Azotobacter vinelandii DJ DJ; ATCC BAA-1303 [CP001157]
2505285
2505374
+
Ser
TGA
[Ensembl]
¡û
>W1810224399
POUK01000003
Gammaproteobacteria
Stutzerimonas degradans DSM 50238 [POUK]
582881
582970
+
Ser
TGA
[ENA]
¡û
>C151001264
AP013068
Gammaproteobacteria
Pseudomonas resinovorans NBRC 106553 [AP013068]
2783125
2783214
+
Ser
TGA
[Ensembl]
¡û
>C151026048
CP007511
Gammaproteobacteria
Stutzerimonas balearica DSM 6083 [CP007511]
2206826
2206915
+
Ser
TGA
[Ensembl]
¡û
>C151068426
CP010415
Gammaproteobacteria
Azotobacter chroococcum NCIMB 8003 [CP010415]
2238244
2238333
+
Ser
TGA
[Ensembl]
¡û
>W1510015260
BBQQ01000010
Gammaproteobacteria
Stutzerimonas degradans KF716 [BBQQ]
39061
38972
-
Ser
TGA
[ENA]
¡û
>W1511187079
JMFZ01000017
Gammaproteobacteria
Stutzerimonas degradans HMP271 [JMFZ]
84879
84968
+
Ser
TGA
[ENA]
¡û
>W1511429741
JUDR01000003
Gammaproteobacteria
Stutzerimonas stutzeri YC-YH1 [JUDR]
375832
375921
+
Ser
TGA
[ENA]
¡û
>W1511530369
JYKO01000023
Gammaproteobacteria
Pseudomonas sp. LFM046 [JYKO]
164883
164794
-
Ser
TGA
[ENA]
¡û
>W1610070295
BCTD01000021
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
48407
48318
-
Ser
TGA
[ENA]
¡û
>C131014898
CP005094
Gammaproteobacteria
Azotobacter vinelandii CA [CP005094]
2505309
2505398
+
Ser
TGA
[Ensembl]
¡û
>C131014962
CP005095
Gammaproteobacteria
Azotobacter vinelandii CA6 [CP005095]
2505297
2505386
+
Ser
TGA
[Ensembl]
¡û
>W1610794744
LONE01000001
Gammaproteobacteria
Stutzerimonas balearica [LONE]
30130
30041
-
Ser
TGA
[ENA]
¡û
>W1610794807
LONF01000003
Gammaproteobacteria
Stutzerimonas balearica [LONF]
30227
30138
-
Ser
TGA
[ENA]
¡û
>W1710067668
BCTD01000021
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
48407
48318
-
Ser
TGA
[ENA]
¡û
>W1710075929
BDAC01000002
Gammaproteobacteria
Pseudomonas indica NBRC 103045 [BDAC]
78687
78598
-
Ser
TGA
[ENA]
¡û
>W1710084491
BDMA01000084
Gammaproteobacteria
Pseudomonas resinovorans [BDMA]
18320
18409
+
Ser
TGA
[ENA]
¡û
>W1710519909
FNFD01000005
Gammaproteobacteria
Pseudomonas indica [FNFD]
1238
1327
+
Ser
TGA
[ENA]
¡û
>W1710522936
FNHO01000003
Gammaproteobacteria
Stutzerimonas balearica DSM 6083 [FNHO]
528619
528708
+
Ser
TGA
[ENA]
¡û
>W1710541747
FNYO01000026
Gammaproteobacteria
Azotobacter beijerinckii [FNYO]
36149
36060
-
Ser
TGA
[ENA]
¡û
>W1710541866
FNYQ01000133
Gammaproteobacteria
Azotobacter beijerinckii [FNYQ]
8966
8877
-
Ser
TGA
[ENA]
¡û
>W1710550542
FOFJ01000021
Gammaproteobacteria
Azotobacter beijerinckii [FOFJ]
25786
25875
+
Ser
TGA
[ENA]
¡û
>W1710556670
FOKJ01000063
Gammaproteobacteria
Azotobacter beijerinckii [FOKJ]
4263
4174
-
Ser
TGA
[ENA]
¡û
>W1710567641
FOSX01000029
Gammaproteobacteria
Azotobacter beijerinckii [FOSX]
25423
25512
+
Ser
TGA
[ENA]
¡û
>W1710581995
FPKM01000039
Gammaproteobacteria
Azotobacter vinelandii [FPKM]
8761
8672
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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