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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24410 (31 seq.)
>W131010965
AHYW01000008
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [AHYW]
18492
18406
-
Ser
CGA
[ENA]
¡û
>W131165411
ARBO01000002
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [ARBO]
238448
238362
-
Ser
CGA
[ENA]
¡û
>W131167302
ARDE01000002
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [ARDE]
162116
162202
+
Ser
CGA
[ENA]
¡û
>W131201863
ASWI01000003
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [ASWI]
1044765
1044679
-
Ser
CGA
[ENA]
¡û
>W131201931
ASWJ01000008
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [ASWJ]
17248
17162
-
Ser
CGA
[ENA]
¡û
>W1712036606
NFHQ01000005
Bacillota
Enterococcus cecorum [NFHQ]
15151
15237
+
Ser
CGA
[ENA]
¡û
>W1712041495
NFLC01000006
Bacillota
Enterococcus cecorum [NFLC]
24716
24802
+
Ser
CGA
[ENA]
¡û
>W1712096933
NIBL01000001
Bacillota
Enterococcus cecorum [NIBL]
437844
437758
-
Ser
CGA
[ENA]
¡û
>W141013037
AHYS01000004
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [AHYS]
292198
292284
+
Ser
CGA
[ENA]
¡û
>WENV181195986
OEQV01008814
[OEQV] metagenome; water of meat washing
168
254
+
Ser
CGA
[ENA]
¢þ
>C181205062
LS483306
Bacillota
Enterococcus cecorum NCTC12421 [LS483306]
1537462
1537548
+
Ser
CGA
-
¡û
>W1910583537
JXKI01000001
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [JXKI]
205357
205443
+
Ser
CGA
[ENA]
¡û
>W1910583577
JXKL01000009
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [JXKL]
14922
15008
+
Ser
CGA
[ENA]
¡û
>W1910605428
LEOW01000020
Bacillota
Enterococcus cecorum 100AEA1 [LEOW]
111784
111698
-
Ser
CGA
[ENA]
¡û
>W1910605481
LEOX01000015
Bacillota
Enterococcus cecorum 108EA1 [LEOX]
14966
15052
+
Ser
CGA
[ENA]
¡û
>W1910605522
LEOY01000007
Bacillota
Enterococcus cecorum 170AEA1 [LEOY]
16718
16804
+
Ser
CGA
[ENA]
¡û
>W1910605570
LEOZ01000009
Bacillota
Enterococcus cecorum 197EA2 [LEOZ]
15079
15165
+
Ser
CGA
[ENA]
¡û
>W1910605612
LEPA01000006
Bacillota
Enterococcus cecorum 215EA1 [LEPA]
18523
18437
-
Ser
CGA
[ENA]
¡û
>W1511632605
LDDZ01000021
Bacillota
Enterococcus cecorum D-104 [LDDZ]
15148
15234
+
Ser
CGA
[ENA]
¡û
>W1511632641
LDEA01000027
Bacillota
Enterococcus cecorum CL-1 [LDEA]
35379
35465
+
Ser
CGA
[ENA]
¡û
>W1511632699
LDEB01000021
Bacillota
Enterococcus cecorum CB-32 [LDEB]
73121
73035
-
Ser
CGA
[ENA]
¡û
>W1511632757
LDEC01000010
Bacillota
Enterococcus cecorum G-29 [LDEC]
237512
237426
-
Ser
CGA
[ENA]
¡û
>W1511632772
LDED01000020
Bacillota
Enterococcus cecorum BB-66 [LDED]
14915
15001
+
Ser
CGA
[ENA]
¡û
>W1511639118
LDOW01000025
Bacillota
Enterococcus cecorum 1710s23 [LDOW]
42626
42540
-
Ser
CGA
[ENA]
¡û
>W1511639138
LDOX01000010
Bacillota
Enterococcus cecorum 1711s24 [LDOX]
14918
15004
+
Ser
CGA
[ENA]
¡û
>C161023163
CP010059
Bacillota
Enterococcus cecorum CE1 [CP010059]
2192108
2192022
-
Ser
CGA
-
¡û
>C161023182
CP010060
Bacillota
Enterococcus cecorum SA1 [CP010060]
2059370
2059284
-
Ser
CGA
-
¡û
>C161023212
CP010061
Bacillota
Enterococcus cecorum SA2 [CP010061]
2058125
2058039
-
Ser
CGA
-
¡û
>C161023264
CP010062
Bacillota
Enterococcus cecorum CE2 [CP010062]
2124114
2124028
-
Ser
CGA
-
¡û
>C161023313
CP010063
Bacillota
Enterococcus cecorum CE3 [CP010063]
2113678
2113592
-
Ser
CGA
-
¡û
>C161023368
CP010064
Bacillota
Enterococcus cecorum SA3 [CP010064]
2109563
2109477
-
Ser
CGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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