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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24425 (125 seq.)
>W1710853207
LLWK01000036
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
198443
198356
-
Ser
GCT
[ENA]
¡û
>W1710892617
LNDX01000030
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
5792
5705
-
Ser
GCT
[ENA]
¡û
>W1710905393
LNNF01000213
Bacteroidota
Flavobacterium psychrophilum [LNNF]
4912
4825
-
Ser
GCT
[ENA]
¡û
>W1710914564
LNTP01000412
Bacteroidota
Flavobacterium psychrophilum [LNTP]
4912
4825
-
Ser
GCT
[ENA]
¡û
>W1710914603
LNTQ01000168
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
4912
4825
-
Ser
GCT
[ENA]
¡û
>W1711053986
LRTL01000003
Bacteroidota
Flavobacterium psychrophilum [LRTL]
434351
434438
+
Ser
GCT
[ENA]
¡û
>W131229160
AUGO01000009
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
72080
71993
-
Ser
GCT
[ENA]
¡û
>W131237961
AUSH01000084
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
170360
170271
-
Ser
GCT
[ENA]
¡û
>W131214035
ATTM01000002
Bacteroidota
Flavobacterium antarcticum DSM 19726 [ATTM]
66982
66895
-
Ser
GCT
[ENA]
¡û
>W131225368
AUDN01000007
Bacteroidota
Flavobacterium tegetincola DSM 22377 [AUDN]
230797
230886
+
Ser
GCT
[ENA]
¡û
>W131229094
AUGN01000001
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
344952
344865
-
Ser
GCT
[ENA]
¡û
>W1711431514
MIJV01000032
Bacteroidota
Flavobacterium psychrophilum [MIJV]
81598
81511
-
Ser
GCT
[ENA]
¡û
>W1711431536
MIJW01000022
Bacteroidota
Flavobacterium psychrophilum [MIJW]
81298
81211
-
Ser
GCT
[ENA]
¡û
>W1711712457
MTBY01000020
Bacteroidota
Flavobacterium psychrophilum [MTBY]
93364
93451
+
Ser
GCT
[ENA]
¡û
>W1711712492
MTBZ01000015
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
64512
64599
+
Ser
GCT
[ENA]
¡û
>W1711712585
MTCB01000015
Bacteroidota
Flavobacterium psychrophilum [MTCB]
512524
512437
-
Ser
GCT
[ENA]
¡û
>W1711712611
MTCC01000013
Bacteroidota
Flavobacterium psychrophilum [MTCC]
362396
362309
-
Ser
GCT
[ENA]
¡û
>W1711712651
MTCD01000187
Bacteroidota
Flavobacterium psychrophilum [MTCD]
129
216
+
Ser
GCT
[ENA]
¡û
>W1711743983
MUFW01000001
Bacteroidota
Flavobacterium sp. LM4 [MUFW]
1452230
1452143
-
Ser
GCT
[ENA]
¡û
>W1711751648
MUNX01000136
Bacteroidota
Flavobacterium sp. A45 [MUNX]
241
328
+
Ser
GCT
[ENA]
¡û
>C009497
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
910550
910636
+
Ser
GCT
[Ensembl]
¡û
>WENV180345344
OBLM01276492
[OBLM] soil metagenome; soil
107
194
+
Ser
GCT
[ENA]
¢þ
>WENV180399238
OBQG01029716
[OBQG] marine metagenome; ENV:00002010
28
115
+
Ser
GCT
[ENA]
¢þ
>WENV180594009
OCOY01010130
[OCOY] marine metagenome; ENVO:00002010
21
108
+
Ser
GCT
[ENA]
¢þ
>W141291499
JASY01000007
Bacteroidota
Flavobacterium chungangense LMG 26729 [JASY]
158305
158218
-
Ser
GCT
[ENA]
¡û
>WENV183621126
OOFT01007668
[OOFT] marine metagenome; sea ice
803
890
+
Ser
GCT
[ENA]
¢þ
>WENV170639175
JFJP01001275
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
90
3
-
Ser
GCT
[ENA]
¢þ
>WENV170711206
LNFM01004018
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
22445
22532
+
Ser
GCT
[ENA]
¢þ
>C181220284
LT670843
Bacteroidota
Flavobacterium psychrophilum OSU THCO2-90 [LT670843]
1681344
1681257
-
Ser
GCT
-
¡û
>C191120489
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
85798
85711
-
Ser
GCT
-
¡û
>C191155233
CP037933
Bacteroidota
Flavobacterium nackdongense GS13 [CP037933]
3794325
3794412
+
Ser
GCT
-
¡û
>C191156064
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
2022727
2022640
-
Ser
GCT
-
¡û
>C191156067
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
2022342
2022255
-
Ser
GCT
-
¡û
>C191161896
CP038810
Bacteroidota
Flavobacterium sangjuense GS03 [CP038810]
2224921
2225008
+
Ser
GCT
-
¡û
>C191213006
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
53403
53316
-
Ser
GCT
-
¡û
>W1910183397
BJNR01000024
Bacteroidota
Flavobacterium aquatile NBRC 15052 [BJNR]
26571
26658
+
Ser
GCT
[ENA]
¡û
>W1910184571
BJSV01000014
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
77566
77653
+
Ser
GCT
[ENA]
¡û
>W1910184628
BJSW01000035
Bacteroidota
Flavobacterium psychrophilum NNS2-1804 [BJSW]
67017
66930
-
Ser
GCT
[ENA]
¡û
>W1910184645
BJSX01000004
Bacteroidota
Flavobacterium psychrophilum NNS4-1804 [BJSX]
37357
37270
-
Ser
GCT
[ENA]
¡û
>W1910184687
BJSY01000011
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
38057
37970
-
Ser
GCT
[ENA]
¡û
>W1910184738
BJSZ01000038
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
67017
66930
-
Ser
GCT
[ENA]
¡û
>W1910184772
BJTA01000022
Bacteroidota
Flavobacterium psychrophilum NNS7-1804 [BJTA]
57747
57834
+
Ser
GCT
[ENA]
¡û
>W1910184886
BJTD01000031
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
59712
59799
+
Ser
GCT
[ENA]
¡û
>W1910184907
BJTE01000008
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
57728
57815
+
Ser
GCT
[ENA]
¡û
>W1910184948
BJTF01000010
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
77501
77588
+
Ser
GCT
[ENA]
¡û
>W1910502989
FYBY01000043
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
92008
92095
+
Ser
GCT
[ENA]
¡û
>W1910503025
FYBZ01000042
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
93099
93186
+
Ser
GCT
[ENA]
¡û
>W1910503043
FYCA01000007
Bacteroidota
Flavobacterium psychrophilum FI055 [FYCA]
92925
93012
+
Ser
GCT
[ENA]
¡û
>W1910503077
FYCB01000030
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
33809
33896
+
Ser
GCT
[ENA]
¡û
>W1910503120
FYCC01000034
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
4853
4766
-
Ser
GCT
[ENA]
¡û
>W1910503144
FYCD01000024
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
4853
4766
-
Ser
GCT
[ENA]
¡û
>W1910503171
FYCE01000015
Bacteroidota
Flavobacterium psychrophilum FI146 [FYCE]
150
63
-
Ser
GCT
[ENA]
¡û
>W1910503222
FYCF01000034
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
92927
93014
+
Ser
GCT
[ENA]
¡û
>W1910503257
FYCG01000040
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
69803
69716
-
Ser
GCT
[ENA]
¡û
>W1910503270
FYCH01000005
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
52013
51926
-
Ser
GCT
[ENA]
¡û
>W1910503305
FYCI01000005
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
97652
97739
+
Ser
GCT
[ENA]
¡û
>W1910503524
FYCM01000106
Bacteroidota
Flavobacterium psychrophilum FPC 831 [FYCM]
5184
5271
+
Ser
GCT
[ENA]
¡û
>W1910503536
FYCN01000040
Bacteroidota
Flavobacterium psychrophilum JIP 08/99 [FYCN]
140
53
-
Ser
GCT
[ENA]
¡û
>W1910503572
FYCO01000030
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
90827
90914
+
Ser
GCT
[ENA]
¡û
>W1910503607
FYCP01000148
Bacteroidota
Flavobacterium psychrophilum KU 051128-10 [FYCP]
58076
58163
+
Ser
GCT
[ENA]
¡û
>W1910503623
FYCQ01000127
Bacteroidota
Flavobacterium psychrophilum KU 061128-1 [FYCQ]
132
45
-
Ser
GCT
[ENA]
¡û
>W1910503645
FYCR01000256
Bacteroidota
Flavobacterium psychrophilum JIP 16/00 [FYCR]
135
48
-
Ser
GCT
[ENA]
¡û
>W1910503678
FYCS01000042
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
92928
93015
+
Ser
GCT
[ENA]
¡û
>W1910503692
FYCT01000005
Bacteroidota
Flavobacterium psychrophilum FI166 [FYCT]
50897
50810
-
Ser
GCT
[ENA]
¡û
>W1910503737
FYCU01000140
Bacteroidota
Flavobacterium psychrophilum KU 060626-4 [FYCU]
60116
60203
+
Ser
GCT
[ENA]
¡û
>W1910503767
FYCV01000191
Bacteroidota
Flavobacterium psychrophilum KU 060626-59 [FYCV]
44462
44549
+
Ser
GCT
[ENA]
¡û
>W1910503804
FYCW01000046
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
92927
93014
+
Ser
GCT
[ENA]
¡û
>W1910503839
FYCX01000055
Bacteroidota
Flavobacterium psychrophilum NO004 [FYCX]
76996
77083
+
Ser
GCT
[ENA]
¡û
>W1910503849
FYCY01000006
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
92752
92839
+
Ser
GCT
[ENA]
¡û
>W1910503885
FYCZ01000008
Bacteroidota
Flavobacterium psychrophilum LM-02-Fp [FYCZ]
4853
4766
-
Ser
GCT
[ENA]
¡û
>W1910503921
FYDA01000007
Bacteroidota
Flavobacterium psychrophilum NO042 [FYDA]
73304
73217
-
Ser
GCT
[ENA]
¡û
>W1910503984
FYDB01000051
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
27620
27533
-
Ser
GCT
[ENA]
¡û
>W1910504000
FYDC01000009
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
92877
92964
+
Ser
GCT
[ENA]
¡û
>W1910504144
FYDF01000259
Bacteroidota
Flavobacterium psychrophilum LVDJ XP189 [FYDF]
138
51
-
Ser
GCT
[ENA]
¡û
>W1910505684
FYEO01000174
Bacteroidota
Flavobacterium psychrophilum FPC 840 [FYEO]
141
54
-
Ser
GCT
[ENA]
¡û
>W1910576483
JSCD01000005
Bacteroidota
Flavobacterium psychrophilum 10 [JSCD]
60722
60635
-
Ser
GCT
[ENA]
¡û
>W1910576612
JSWL01000001
Bacteroidota
Flavobacterium psychrophilum IWL08 [JSWL]
485862
485775
-
Ser
GCT
[ENA]
¡û
>W1910808817
MUGQ01000014
Bacteroidota
Flavobacterium aquatile ATCC 11947 [MUGQ]
73865
73778
-
Ser
GCT
[ENA]
¡û
>W1910808958
MUGT01000149
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
4073
3986
-
Ser
GCT
[ENA]
¡û
>W1910809483
MUHE01000002
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
2547
2460
-
Ser
GCT
[ENA]
¡û
>C09106230
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
593359
593270
-
Ser
GCT
[Ensembl]
¡û
>W1910933640
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
28767
28854
+
Ser
GCT
[ENA]
¡û
>W1911564269
PCMW01000021
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
7577
7664
+
Ser
GCT
[ENA]
¡û
>SRA1001852
SRR001308.91213
Metagenomic characterization of a wastewater treatment plant (SRP000180)
71
158
+
Ser
GCT
[SRA]
>W1810089353
PGER01000001
Bacteroidota
Flavobacterium sp. 1 [PGER]
2029319
2029232
-
Ser
GCT
[ENA]
¡û
>W1810265862
PQVG01000005
Bacteroidota
Flavobacterium alvei HR-AY [PQVG]
160826
160739
-
Ser
GCT
[ENA]
¡û
>W1810533302
QCZI01000017
Bacteroidota
Flavobacterium psychrotolerans RB1R5 [QCZI]
9384
9471
+
Ser
GCT
[ENA]
¡û
>W1810577030
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
59677
59590
-
Ser
GCT
[ENA]
¡û
>C151018520
CP007206
Bacteroidota
Flavobacterium psychrophilum FPG101 [CP007206]
1671252
1671165
-
Ser
GCT
[Ensembl]
¡û
>C151018549
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
1379640
1379727
+
Ser
GCT
[Ensembl]
¡û
>C151030357
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
1722144
1722057
-
Ser
GCT
[Ensembl]
¡û
>C151038961
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
848922
849009
+
Ser
GCT
[Ensembl]
¡û
>C151038997
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
835020
835107
+
Ser
GCT
[Ensembl]
¡û
>C151039034
CP008883
Bacteroidota
Flavobacterium psychrophilum v4-33 [CP008883]
844169
844256
+
Ser
GCT
[Ensembl]
¡û
>C151039526
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
838616
838703
+
Ser
GCT
[Ensembl]
¡û
>C151065049
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
908928
909015
+
Ser
GCT
-
¡û
>C151065097
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
908709
908796
+
Ser
GCT
-
¡û
>C151072383
CP010798
Bacteroidota
Flavobacterium psychrophilum [CP010798]
921131
921218
+
Ser
GCT
-
¡û
>W1511346610
JRHH01000004
Bacteroidota
Flavobacterium aquatile LMG 4008 [JRHH]
26870
26957
+
Ser
GCT
[ENA]
¡û
>W1511357279
JRWD01000042
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
38124
38211
+
Ser
GCT
[ENA]
¡û
>W1511357326
JRWE01000042
Bacteroidota
Flavobacterium psychrophilum TN [JRWE]
38127
38214
+
Ser
GCT
[ENA]
¡û
>W1511357373
JRWF01000040
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
38124
38211
+
Ser
GCT
[ENA]
¡û
>W1511390888
JSYL01000005
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
143527
143438
-
Ser
GCT
[ENA]
¡û
>C161024416
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
907942
908029
+
Ser
GCT
-
¡û
>C161024464
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
909424
909511
+
Ser
GCT
-
¡û
>C161024512
CP010278
Bacteroidota
Flavobacterium psychrophilum 3 [CP010278]
909448
909535
+
Ser
GCT
-
¡û
>W1610062176
BCNG01000004
Bacteroidota
Flavobacterium psychrophilum [BCNG]
70244
70331
+
Ser
GCT
[ENA]
¡û
>W121086520
AKJZ01000027
Bacteroidota
Flavobacterium sp. CF136 [AKJZ]
8294
8207
-
Ser
GCT
[ENA]
¡û
>W1610716331
LLWK01000036
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
198443
198356
-
Ser
GCT
[ENA]
¡û
>W1610752883
LNDX01000030
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
5792
5705
-
Ser
GCT
[ENA]
¡û
>W1610764407
LNNF01000213
Bacteroidota
Flavobacterium psychrophilum [LNNF]
4912
4825
-
Ser
GCT
[ENA]
¡û
>W1610772923
LNTP01000412
Bacteroidota
Flavobacterium psychrophilum [LNTP]
4912
4825
-
Ser
GCT
[ENA]
¡û
>W1610772962
LNTQ01000168
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
4912
4825
-
Ser
GCT
[ENA]
¡û
>W1610895174
LRTL01000003
Bacteroidota
Flavobacterium psychrophilum [LRTL]
434351
434438
+
Ser
GCT
[ENA]
¡û
>WENV080150
AATO01009308
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
459
550
+
Ser
GCT
[ENA]
>W1710059717
BCNG01000004
Bacteroidota
Flavobacterium psychrophilum [BCNG]
70244
70331
+
Ser
GCT
[ENA]
¡û
>W1710087864
BDSH01000015
Bacteroidota
Flavobacterium psychrophilum [BDSH]
35642
35729
+
Ser
GCT
[ENA]
¡û
>W1710507324
FMVE01000007
Bacteroidota
Flavobacterium psychrophilum DSM 3660 [FMVE]
73816
73729
-
Ser
GCT
[ENA]
¡û
>W1710519770
FNEZ01000004
Bacteroidota
Flavobacterium noncentrifugens [FNEZ]
257825
257912
+
Ser
GCT
[ENA]
¡û
>W1710538643
FNUS01000001
Bacteroidota
Halpernia humi [FNUS]
783547
783458
-
Ser
GCT
[ENA]
¡û
>W1710555837
FOJT01000006
Bacteroidota
Flavobacterium swingsii [FOJT]
95763
95850
+
Ser
GCT
[ENA]
¡û
>W1710557450
FOLA01000007
Bacteroidota
Kaistella jeonii [FOLA]
53800
53889
+
Ser
GCT
[ENA]
¡û
>W1710564840
FOQT01000005
Bacteroidota
Halpernia frigidisoli [FOQT]
221981
221892
-
Ser
GCT
[ENA]
¡û
>W1710585072
FQWB01000005
Bacteroidota
Flavobacterium fluvii [FQWB]
189120
189033
-
Ser
GCT
[ENA]
¡û
>W1710598919
FTOI01000006
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
79529
79618
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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